Variant report

Variant	rs72818784
Chromosome Location	chr10:91549414-91549415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1129777	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11330	0.84[ASN][1000 genomes]
rs12570750	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12570813	0.80[ASN][1000 genomes]
rs12571268	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12571918	0.87[ASN][1000 genomes]
rs12572012	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12572608	0.88[ASN][1000 genomes]
rs12572869	0.87[ASN][1000 genomes]
rs12572928	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763346	0.82[ASN][1000 genomes]
rs12764076	0.80[ASN][1000 genomes]
rs12771413	0.83[ASN][1000 genomes]
rs12775091	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12775783	0.88[ASN][1000 genomes]
rs12783582	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12783845	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1409357	0.87[ASN][1000 genomes]
rs1590566	0.95[ASN][1000 genomes]
rs17125834	0.87[ASN][1000 genomes]
rs17126269	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17127001	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1926139	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1969902	0.91[ASN][1000 genomes]
rs2094214	0.88[ASN][1000 genomes]
rs2418929	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34379399	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34408087	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34486602	0.86[ASN][1000 genomes]
rs34591435	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34663515	0.83[ASN][1000 genomes]
rs34692063	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34784021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34928397	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34993776	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36019294	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740035	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3758388	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3824607	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3925446	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3962370	0.96[ASN][1000 genomes]
rs4934494	0.87[ASN][1000 genomes]
rs55823491	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56189305	0.89[ASN][1000 genomes]
rs58163515	0.82[ASN][1000 genomes]
rs6586213	0.85[ASN][1000 genomes]
rs67111731	0.87[ASN][1000 genomes]
rs67827533	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7081788	0.86[ASN][1000 genomes]
rs7098233	0.86[ASN][1000 genomes]
rs72818731	0.83[AFR][1000 genomes]
rs745215	0.86[ASN][1000 genomes]
rs768805	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv948132	chr10:91546180-91550682	Weak transcription Bivalent Enhancer Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3337343	chr10:91546722-91549420	Enhancers Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91506600-91554200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:91533200-91554400	Weak transcription	NHEK	skin
3	chr10:91540600-91554200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:91540800-91549600	Weak transcription	Lung	lung
5	chr10:91540800-91554000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:91541200-91552000	Weak transcription	HMEC	breast
7	chr10:91541200-91554800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:91541400-91550200	Weak transcription	Fetal Intestine Small	intestine
9	chr10:91541400-91560000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:91541600-91552200	Weak transcription	Hela-S3	cervix
11	chr10:91541600-91554000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:91542600-91554000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr10:91544600-91554000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:91549000-91549600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:91549000-91549600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:91549000-91549800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:91549000-91549800	Enhancers	Fetal Thymus	thymus
18	chr10:91549000-91549800	Enhancers	K562	blood
19	chr10:91549200-91549600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:91549400-91549600	Enhancers	Right Atrium	heart
21	chr10:91549400-91549800	Enhancers	Adipose Nuclei	Adipose

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