Variant report

Variant	rs34408087
Chromosome Location	chr10:91543551-91543552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10881681	0.83[AMR][1000 genomes]
rs10881683	0.80[AMR][1000 genomes]
rs1129777	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11330	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12570750	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12570813	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12571268	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12571918	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12572012	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572608	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12572869	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12572928	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12763346	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12764076	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12771413	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12775091	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12775783	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12783582	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12783845	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1409357	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1590566	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17125834	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17126269	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17127001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17127588	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17127596	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1926139	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1969902	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2094214	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2418929	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34379399	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34486602	0.88[ASN][1000 genomes]
rs34591435	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34663515	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34692063	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34784021	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34928397	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34993776	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36019294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740034	0.86[AMR][1000 genomes]
rs3740035	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3758388	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3824607	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3925446	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3962370	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4934494	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55823491	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56189305	0.92[ASN][1000 genomes]
rs58163515	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6586213	0.88[ASN][1000 genomes]
rs67111731	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67827533	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7081788	0.88[ASN][1000 genomes]
rs7098233	0.88[ASN][1000 genomes]
rs72818784	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs745215	0.89[ASN][1000 genomes]
rs768805	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91504200-91544200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:91506400-91543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:91506400-91544800	Weak transcription	Ovary	ovary
5	chr10:91506400-91549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:91506600-91543600	Weak transcription	Brain Germinal Matrix	brain
7	chr10:91506600-91554200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:91523000-91549400	Weak transcription	Adipose Nuclei	Adipose
9	chr10:91523400-91549000	Weak transcription	K562	blood
10	chr10:91523600-91544200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:91529600-91549000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr10:91533200-91554400	Weak transcription	NHEK	skin
13	chr10:91533600-91544600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:91535200-91544000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:91537000-91544200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:91538400-91545000	Weak transcription	A549	lung
17	chr10:91539000-91544400	Weak transcription	Spleen	Spleen
18	chr10:91540600-91545000	Weak transcription	Aorta	Aorta
19	chr10:91540600-91546600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:91540600-91554200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:91540800-91544000	Weak transcription	Primary B cells from cord blood	blood
22	chr10:91540800-91545200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:91540800-91549600	Weak transcription	Lung	lung
24	chr10:91540800-91554000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:91541000-91548800	Weak transcription	Dnd41	blood
26	chr10:91541000-91549000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:91541200-91544200	Weak transcription	HSMM	muscle
28	chr10:91541200-91544600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:91541200-91549000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:91541200-91549200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:91541200-91552000	Weak transcription	HMEC	breast
32	chr10:91541200-91554800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:91541400-91544000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr10:91541400-91544200	Weak transcription	Fetal Stomach	stomach
35	chr10:91541400-91546200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:91541400-91546600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:91541400-91547800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:91541400-91548800	Weak transcription	Primary T cells from cord blood	blood
39	chr10:91541400-91549000	Weak transcription	Fetal Thymus	thymus
40	chr10:91541400-91549200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:91541400-91550200	Weak transcription	Fetal Intestine Small	intestine
42	chr10:91541400-91560000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr10:91541600-91549000	Weak transcription	Thymus	Thymus
44	chr10:91541600-91552200	Weak transcription	Hela-S3	cervix
45	chr10:91541600-91554000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:91541800-91545000	Weak transcription	GM12878-XiMat	blood
47	chr10:91542000-91543600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:91542400-91544000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:91542600-91543600	Enhancers	HUVEC	blood vessel
50	chr10:91542600-91544200	Enhancers	Osteobl	bone

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