Variant report

Variant	rs745215
Chromosome Location	chr10:91429271-91429272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91427748..91429967-chr10:91430864..91434039,3	K562	blood:
2	chr10:91426396..91428271-chr10:91428342..91432037,3	MCF-7	breast:
3	chr10:91427349..91430030-chr10:91442278..91445461,3	K562	blood:
4	chr10:91423205..91426189-chr10:91428297..91431158,2	K562	blood:
5	chr10:91428126..91429967-chr10:91431808..91434039,2	K562	blood:
6	chr10:91427763..91430030-chr10:91442877..91445461,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10159610	1.00[CEU][hapmap]
rs11185841	0.88[EUR][1000 genomes]
rs1129777	0.95[ASN][1000 genomes]
rs11330	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs11598411	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs11817267	0.88[EUR][1000 genomes]
rs12414170	0.88[EUR][1000 genomes]
rs12569886	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs12570256	0.88[EUR][1000 genomes]
rs12570750	0.91[ASN][1000 genomes]
rs12570813	0.84[CHB][hapmap];0.91[ASN][1000 genomes]
rs12571268	0.89[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs12571525	0.88[EUR][1000 genomes]
rs12571918	0.81[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs12572012	0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs12572608	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs12572869	0.90[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs12572928	0.86[ASN][1000 genomes]
rs12573024	0.92[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs12573060	0.92[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs12763346	0.92[ASN][1000 genomes]
rs12764076	0.91[ASN][1000 genomes]
rs12766537	0.87[EUR][1000 genomes]
rs12771413	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs12775091	0.91[ASN][1000 genomes]
rs12775783	0.99[ASN][1000 genomes]
rs12783582	0.95[ASN][1000 genomes]
rs12783845	0.90[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs1326260	0.88[EUR][1000 genomes]
rs1409355	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs1409357	0.99[ASN][1000 genomes]
rs1555881	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs1555882	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs1590566	0.87[ASN][1000 genomes]
rs17125834	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs17126269	0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs17127001	0.85[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1926139	0.91[ASN][1000 genomes]
rs1969902	0.87[ASN][1000 genomes]
rs2038920	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs2094214	0.98[ASN][1000 genomes]
rs2418929	0.85[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2420640	0.92[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs34379399	0.99[ASN][1000 genomes]
rs34408087	0.89[ASN][1000 genomes]
rs34486602	0.98[ASN][1000 genomes]
rs34591435	0.95[ASN][1000 genomes]
rs34663515	0.93[ASN][1000 genomes]
rs34692063	0.95[ASN][1000 genomes]
rs34784021	0.86[ASN][1000 genomes]
rs34928397	0.91[ASN][1000 genomes]
rs34993776	0.99[ASN][1000 genomes]
rs36019294	0.89[ASN][1000 genomes]
rs3740035	0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs3758388	0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs3824607	0.95[ASN][1000 genomes]
rs3925446	0.91[ASN][1000 genomes]
rs3962370	0.88[ASN][1000 genomes]
rs4934493	0.92[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs4934494	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs55823491	0.91[ASN][1000 genomes]
rs56189305	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58163515	0.93[ASN][1000 genomes]
rs6586213	0.97[ASN][1000 genomes]
rs67111731	0.99[ASN][1000 genomes]
rs67827533	0.93[ASN][1000 genomes]
rs7076351	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs7081788	0.96[ASN][1000 genomes]
rs7089150	0.88[EUR][1000 genomes]
rs7089645	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs7098233	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs7098988	0.96[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs72818784	0.86[ASN][1000 genomes]
rs749607	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs768805	0.95[ASN][1000 genomes]
rs7905382	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs7910615	0.88[EUR][1000 genomes]
rs7911443	0.89[EUR][1000 genomes]
rs7912591	0.89[EUR][1000 genomes]
rs9325444	0.82[JPT][hapmap]
rs943127	0.92[CEU][hapmap];0.89[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs745215	KIF20B	cis	cerebellum	SCAN
rs745215	FGFBP3	cis	cerebellum	SCAN
rs745215	KIF20B	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91425400-91430000	Weak transcription	HSMMtube	muscle
2	chr10:91427800-91429600	Enhancers	Fetal Intestine Large	intestine
3	chr10:91427800-91431400	Enhancers	HepG2	liver
4	chr10:91428200-91429600	Enhancers	Fetal Intestine Small	intestine
5	chr10:91428400-91431800	Enhancers	Fetal Muscle Leg	muscle
6	chr10:91429000-91430200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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