Variant report

Variant	rs12771413
Chromosome Location	chr10:91392767-91392768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91390559..91394357-chr10:91401032..91405711,7	MCF-7	breast:
2	chr10:91370491..91372733-chr10:91391688..91393603,3	MCF-7	breast:
3	chr10:91392070..91394267-chr10:91459711..91461300,2	MCF-7	breast:
4	chr10:91386291..91388321-chr10:91392443..91394687,2	MCF-7	breast:
5	chr10:91388415..91393520-chr10:91403562..91406264,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152782	Chromatin interaction
ENSG00000232936	Chromatin interaction
ENSG00000249962	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10881613	0.95[CEU][hapmap]
rs1129777	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11330	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12570750	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12570813	0.90[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12571268	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12571918	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572012	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12572608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12572869	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572928	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12763346	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12764076	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12775091	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12775783	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12783582	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12783845	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1359624	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs1409357	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1590566	0.84[ASN][1000 genomes]
rs17125834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17126269	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17127001	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17127588	0.87[AMR][1000 genomes]
rs17127596	0.89[AMR][1000 genomes]
rs1926139	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1969902	0.84[ASN][1000 genomes]
rs2094214	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2418929	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34379399	0.97[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34408087	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34486602	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34591435	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34663515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34692063	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34784021	0.83[ASN][1000 genomes]
rs34928397	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34993776	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs36019294	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3740033	0.95[CEU][hapmap]
rs3740034	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3740035	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3758388	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3824607	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3925446	0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3962370	0.84[ASN][1000 genomes]
rs4934494	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55823491	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56189305	0.89[ASN][1000 genomes]
rs58163515	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6586213	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs67111731	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67827533	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7081788	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7098233	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72818784	0.83[ASN][1000 genomes]
rs745215	0.93[ASN][1000 genomes]
rs768805	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs927907	0.95[CEU][hapmap]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
2	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
3	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
4	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:91359400-91393000	Weak transcription	NHEK	skin
6	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:91371000-91392800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:91371800-91393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:91371800-91401600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
12	chr10:91372000-91393400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:91376000-91394200	Weak transcription	Primary T cells from cord blood	blood
14	chr10:91380600-91403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:91383800-91392800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:91383800-91392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:91383800-91393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:91383800-91402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:91384000-91394600	Weak transcription	Dnd41	blood
20	chr10:91384400-91393600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:91385000-91393600	Weak transcription	Left Ventricle	heart
22	chr10:91385000-91393800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr10:91385000-91403000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:91385400-91393000	Weak transcription	HSMM	muscle
25	chr10:91385400-91403000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr10:91385600-91402800	Weak transcription	Fetal Muscle Leg	muscle
27	chr10:91385800-91395600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:91385800-91403200	Weak transcription	Fetal Brain Male	brain
29	chr10:91386000-91393000	Weak transcription	GM12878-XiMat	blood
30	chr10:91386000-91393000	Weak transcription	Osteobl	bone
31	chr10:91386000-91393600	Weak transcription	Right Ventricle	heart
32	chr10:91386000-91394000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:91386000-91402800	Weak transcription	NH-A	brain
34	chr10:91386000-91403000	Weak transcription	NHDF-Ad	bronchial
35	chr10:91386000-91403200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr10:91386000-91403200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:91386000-91403200	Weak transcription	Ovary	ovary
38	chr10:91386600-91397000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:91386800-91393200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:91386800-91403200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:91388200-91396800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr10:91388200-91403400	Weak transcription	Thymus	Thymus
43	chr10:91389000-91393000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:91389000-91393200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:91389000-91393600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:91389000-91394000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:91389400-91392800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:91389400-91394400	Enhancers	HepG2	liver
49	chr10:91389600-91402800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:91389800-91392800	Weak transcription	Fetal Heart	heart

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