Variant report

Variant	rs12572012
Chromosome Location	chr10:91487649-91487650
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91479300..91481575-chr10:91487433..91489721,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10881613	0.87[CEU][hapmap]
rs10881629	0.84[JPT][hapmap]
rs10881681	0.80[AMR][1000 genomes]
rs11185866	0.83[JPT][hapmap]
rs1129777	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11330	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12250365	0.83[JPT][hapmap]
rs12570750	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12570813	0.90[CHB][hapmap];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12571268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571918	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12572608	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12572869	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12572928	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12763346	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12764076	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12771413	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12775091	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12775783	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12783582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783845	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359624	0.91[CEU][hapmap]
rs1409357	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1590566	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17125834	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17126269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17127001	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17127588	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17127596	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1926139	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1969902	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2094214	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2418929	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34379399	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34408087	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34486602	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34591435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663515	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34692063	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34784021	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34928397	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34993776	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36019294	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3740033	0.91[CEU][hapmap]
rs3740034	0.89[AMR][1000 genomes]
rs3740035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824607	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3925446	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3962370	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4934494	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55823491	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56189305	0.98[ASN][1000 genomes]
rs58163515	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6586213	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67111731	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67827533	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7081788	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7098233	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72818784	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs745215	0.95[ASN][1000 genomes]
rs768805	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927907	0.87[CEU][hapmap]
rs9325444	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054572	chr10:91471956-91537070	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91461800-91505800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:91462000-91505800	Weak transcription	Left Ventricle	heart
4	chr10:91462200-91505600	Weak transcription	Esophagus	oesophagus
5	chr10:91462200-91505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:91462200-91505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:91462200-91505800	Weak transcription	Gastric	stomach
8	chr10:91462200-91505800	Weak transcription	Lung	lung
9	chr10:91462400-91488600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr10:91462400-91505600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:91463400-91505600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr10:91463400-91505800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:91463400-91521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:91465800-91505600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:91466600-91506800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:91467000-91491000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:91467200-91489000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:91467200-91489000	Weak transcription	K562	blood
19	chr10:91467200-91505600	Weak transcription	Fetal Brain Female	brain
20	chr10:91467400-91498200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:91467600-91538400	Weak transcription	Fetal Heart	heart
22	chr10:91467800-91507200	Weak transcription	Fetal Brain Male	brain
23	chr10:91468600-91488000	Weak transcription	Aorta	Aorta
24	chr10:91468800-91506600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:91469200-91505000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:91469400-91494800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:91469600-91523600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:91470000-91503800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:91470200-91505800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:91470400-91494800	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr10:91472600-91530200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:91473600-91505600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr10:91473800-91505800	Weak transcription	Liver	Liver
34	chr10:91474600-91530200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr10:91475000-91494800	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:91475200-91492000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:91476000-91505400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr10:91476000-91522400	Weak transcription	Placenta	Placenta
39	chr10:91476400-91508000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr10:91476800-91505600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr10:91477600-91491400	Weak transcription	Adipose Nuclei	Adipose
42	chr10:91478400-91524200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr10:91478400-91542400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr10:91479200-91505600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:91479600-91505000	Weak transcription	Fetal Intestine Large	intestine
46	chr10:91479600-91510200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:91479600-91522400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr10:91480800-91542200	Weak transcription	Fetal Kidney	kidney
49	chr10:91481000-91488400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr10:91481200-91488400	Weak transcription	A549	lung

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