Variant report

Variant	rs3740035
Chromosome Location	chr10:91476465-91476466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91474449..91476838-chr10:91488481..91491961,3	K562	blood:
2	chr10:91473623..91477371-chr10:91489479..91493705,4	K562	blood:
3	chr10:91469218..91474577-chr10:91475007..91479168,10	K562	blood:
4	chr10:91474969..91476906-chr10:91477130..91479162,2	K562	blood:
5	chr10:91474933..91477737-chr10:91479936..91484562,5	K562	blood:

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10881613	0.87[CEU][hapmap]
rs10881629	0.82[JPT][hapmap]
rs10881681	0.80[AMR][1000 genomes]
rs11185866	0.82[JPT][hapmap]
rs1129777	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11330	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12250365	0.81[JPT][hapmap]
rs12570750	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12570813	0.90[CHB][hapmap];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12571268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571918	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12572012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572608	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12572869	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12572928	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12763346	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12764076	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12771413	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12775091	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12775783	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12783582	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783845	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359624	0.91[CEU][hapmap]
rs1409357	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1590566	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17125834	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17126269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17127001	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17127588	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17127596	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1926139	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1969902	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2094214	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2418929	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34379399	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34408087	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34486602	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34591435	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34663515	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34692063	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34784021	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34928397	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34993776	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36019294	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3740033	0.91[CEU][hapmap]
rs3740034	0.89[AMR][1000 genomes]
rs3758388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824607	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3925446	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3962370	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4934494	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55823491	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56189305	0.98[ASN][1000 genomes]
rs58163515	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6586213	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67111731	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67827533	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7081788	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7098233	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72818784	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs745215	0.95[ASN][1000 genomes]
rs768805	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927907	0.87[CEU][hapmap]
rs9325444	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054572	chr10:91471956-91537070	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91461800-91505800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:91462000-91505800	Weak transcription	Left Ventricle	heart
4	chr10:91462200-91476600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:91462200-91476600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr10:91462200-91476600	Weak transcription	Fetal Intestine Large	intestine
7	chr10:91462200-91477600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:91462200-91478000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:91462200-91480400	Weak transcription	Fetal Stomach	stomach
10	chr10:91462200-91480600	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:91462200-91482400	Weak transcription	Pancreas	Pancrea
12	chr10:91462200-91486400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:91462200-91505600	Weak transcription	Esophagus	oesophagus
14	chr10:91462200-91505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:91462200-91505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:91462200-91505800	Weak transcription	Gastric	stomach
17	chr10:91462200-91505800	Weak transcription	Lung	lung
18	chr10:91462400-91477600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:91462400-91479200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:91462400-91480000	Weak transcription	Fetal Kidney	kidney
21	chr10:91462400-91480600	Weak transcription	Primary T cells from cord blood	blood
22	chr10:91462400-91480600	Weak transcription	Fetal Intestine Small	intestine
23	chr10:91462400-91484600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:91462400-91488600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr10:91462400-91505600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:91462600-91477600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:91462800-91476600	Weak transcription	Primary B cells from cord blood	blood
28	chr10:91463200-91477600	Weak transcription	NH-A	brain
29	chr10:91463400-91480600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:91463400-91484200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:91463400-91505600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr10:91463400-91505800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:91463400-91521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:91463600-91477000	Weak transcription	HMEC	breast
35	chr10:91464000-91486800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:91465600-91479400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:91465800-91476800	Weak transcription	NHEK	skin
38	chr10:91465800-91505600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr10:91466200-91484200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:91466600-91506800	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:91466800-91476600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr10:91467000-91491000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:91467200-91489000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:91467200-91489000	Weak transcription	K562	blood
45	chr10:91467200-91505600	Weak transcription	Fetal Brain Female	brain
46	chr10:91467400-91498200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:91467600-91538400	Weak transcription	Fetal Heart	heart
48	chr10:91467800-91507200	Weak transcription	Fetal Brain Male	brain
49	chr10:91468600-91488000	Weak transcription	Aorta	Aorta
50	chr10:91468800-91506600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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