Variant report

Variant	rs17127588
Chromosome Location	chr10:91575644-91575645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10881613	0.86[CEU][hapmap]
rs10881681	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10881683	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1129777	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11330	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs12570750	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12570813	0.83[AMR][1000 genomes]
rs12571268	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12571918	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs12572012	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12572608	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs12572869	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs12572928	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12764076	0.83[AMR][1000 genomes]
rs12771413	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs12775091	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12775783	0.87[AMR][1000 genomes]
rs12783582	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12783845	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1359624	0.91[CEU][hapmap]
rs1409357	0.87[AMR][1000 genomes]
rs1590566	0.81[AMR][1000 genomes]
rs17125834	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs17126269	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17127001	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17127596	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1926139	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2026554	0.87[EUR][1000 genomes]
rs2094214	0.84[AMR][1000 genomes]
rs2418929	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34379399	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34408087	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34461207	0.83[EUR][1000 genomes]
rs34591435	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34663515	0.87[AMR][1000 genomes]
rs34692063	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34928397	0.90[AMR][1000 genomes]
rs34993776	0.87[AMR][1000 genomes]
rs36019294	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3740033	0.91[CEU][hapmap]
rs3740034	0.80[AMR][1000 genomes]
rs3740035	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3758388	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3824607	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3925446	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3962370	0.81[AMR][1000 genomes]
rs4934494	0.91[CEU][hapmap]
rs55823491	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67111731	0.87[AMR][1000 genomes]
rs67827533	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7098233	0.91[CEU][hapmap]
rs768805	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs927907	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1043571	chr10:91568555-92036154	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv551874	chr10:91570211-92036154	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91574200-91576400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:91575200-91576400	Enhancers	HepG2	liver

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