Variant report

Variant	rs10160718
Chromosome Location	chr11:87177293-87177294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1004233	1.00[EUR][1000 genomes]
rs12290897	1.00[EUR][1000 genomes]
rs17150127	1.00[EUR][1000 genomes]
rs17150129	1.00[EUR][1000 genomes]
rs17150219	1.00[EUR][1000 genomes]
rs17150227	1.00[EUR][1000 genomes]
rs17150228	1.00[EUR][1000 genomes]
rs2375037	1.00[EUR][1000 genomes]
rs2375038	1.00[EUR][1000 genomes]
rs4313604	1.00[EUR][1000 genomes]
rs57022242	1.00[EUR][1000 genomes]
rs59274300	1.00[EUR][1000 genomes]
rs59323576	1.00[EUR][1000 genomes]
rs59806974	1.00[EUR][1000 genomes]
rs60472282	1.00[EUR][1000 genomes]
rs7119694	1.00[EUR][1000 genomes]
rs73537956	1.00[EUR][1000 genomes]
rs7945874	1.00[EUR][1000 genomes]
rs885142	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832224	chr11:87162121-87355923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3347109	chr11:87163383-87245753	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3357299	chr11:87163584-87245523	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87175600-87177800	Enhancers	Fetal Stomach	stomach
2	chr11:87176000-87179000	Enhancers	Colon Smooth Muscle	Colon
3	chr11:87176600-87177600	Enhancers	Fetal Muscle Leg	muscle
4	chr11:87176600-87178200	Enhancers	Rectal Smooth Muscle	rectum
5	chr11:87176600-87178400	Enhancers	Fetal Lung	lung
6	chr11:87176800-87178400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:87177000-87178000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:87177200-87177600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:87177200-87178200	Enhancers	Adipose Nuclei	Adipose
10	chr11:87177200-87178200	Enhancers	NHDF-Ad	bronchial
11	chr11:87177200-87178200	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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