Variant report

Variant	rs73537956
Chromosome Location	chr11:87157424-87157425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1004233	1.00[EUR][1000 genomes]
rs10160718	1.00[EUR][1000 genomes]
rs12290897	1.00[EUR][1000 genomes]
rs17150127	1.00[EUR][1000 genomes]
rs17150129	1.00[EUR][1000 genomes]
rs17150219	1.00[EUR][1000 genomes]
rs17150227	1.00[EUR][1000 genomes]
rs17150228	1.00[EUR][1000 genomes]
rs2375037	1.00[EUR][1000 genomes]
rs2375038	1.00[EUR][1000 genomes]
rs4313604	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57022242	1.00[EUR][1000 genomes]
rs59274300	1.00[EUR][1000 genomes]
rs59323576	1.00[EUR][1000 genomes]
rs59806974	1.00[EUR][1000 genomes]
rs7119694	1.00[EUR][1000 genomes]
rs7945874	1.00[EUR][1000 genomes]
rs885142	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87148400-87157600	Enhancers	NHDF-Ad	bronchial
2	chr11:87149600-87162000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:87151600-87165200	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:87154600-87157600	Enhancers	NHLF	lung
5	chr11:87154600-87157800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:87156400-87165000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:87156800-87164000	Weak transcription	Fetal Heart	heart
8	chr11:87156800-87164800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:87157000-87161800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:87157000-87161800	Weak transcription	HSMM	muscle
11	chr11:87157000-87162000	Weak transcription	HSMMtube	muscle
12	chr11:87157000-87162600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:87157000-87165000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:87157200-87162200	Weak transcription	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links