Variant report

Variant	rs12290897
Chromosome Location	chr11:87205569-87205570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1004233	1.00[EUR][1000 genomes]
rs10160718	1.00[EUR][1000 genomes]
rs11235185	0.86[AFR][1000 genomes]
rs17150127	1.00[EUR][1000 genomes]
rs17150129	1.00[EUR][1000 genomes]
rs17150219	1.00[EUR][1000 genomes]
rs17150227	1.00[EUR][1000 genomes]
rs17150228	1.00[EUR][1000 genomes]
rs2375037	1.00[EUR][1000 genomes]
rs2375038	1.00[EUR][1000 genomes]
rs4313604	1.00[EUR][1000 genomes]
rs57022242	1.00[EUR][1000 genomes]
rs59274300	1.00[EUR][1000 genomes]
rs59323576	1.00[EUR][1000 genomes]
rs59806974	1.00[EUR][1000 genomes]
rs60472282	1.00[EUR][1000 genomes]
rs7119694	1.00[EUR][1000 genomes]
rs73537956	1.00[EUR][1000 genomes]
rs7945874	1.00[EUR][1000 genomes]
rs885142	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832224	chr11:87162121-87355923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3347109	chr11:87163383-87245753	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3357299	chr11:87163584-87245523	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1041197	chr11:87185278-87227163	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87204400-87205600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:87204400-87205800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr11:87204800-87206200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:87204800-87207800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:87205200-87205800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:87205200-87206400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:87205400-87206600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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