Variant report

Variant	rs10160811
Chromosome Location	chr11:64808647-64808648
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:268)
CpG islands
(count:0)
Chromatin interactive
region (count:30)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:268 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr11:64808063-64808752	HepG2	liver:	n/a	n/a
2	YY1	chr11:64808214-64808716	HCT-116	colon:	n/a	n/a
3	RAD21	chr11:64808312-64808664	ECC-1	luminal epithelium:	n/a	n/a
4	MAZ	chr11:64808183-64809103	K562	blood:	n/a	n/a
5	SIN3AK20	chr11:64808229-64809171	SK-N-SH	brain:	n/a	n/a
6	HEY1	chr11:64808132-64809185	K562	blood:	n/a	chr11:64808353-64808368
7	MAX	chr11:64808156-64809344	A549	lung:	n/a	n/a
8	SP1	chr11:64807998-64808822	A549	lung:	n/a	chr11:64808358-64808367 chr11:64808353-64808367 chr11:64808357-64808369 chr11:64808354-64808363 chr11:64808358-64808367 chr11:64808357-64808369 chr11:64808352-64808364 chr11:64808353-64808362 chr11:64808352-64808364 chr11:64808359-64808368 chr11:64808363-64808372 chr11:64808353-64808362 chr11:64808352-64808363
9	POLR2A	chr11:64808096-64809217	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr11:64808125-64808887	K562	blood:	n/a	n/a
11	HNF4G	chr11:64808317-64808676	HepG2	liver:	n/a	chr11:64808319-64808327
12	REST	chr11:64808646-64809024	A549	lung:	n/a	n/a
13	ELF1	chr11:64808203-64809405	GM12878	blood:	n/a	n/a
14	TCF12	chr11:64807980-64809161	A549	lung:	n/a	n/a
15	MYC	chr11:64808332-64809170	HepG2	liver:	n/a	n/a
16	TAF1	chr11:64808143-64809271	H1-hESC	embryonic stem cell:	n/a	n/a
17	RCOR1	chr11:64808287-64808813	GM12878	blood:	n/a	n/a
18	SRF	chr11:64808235-64808678	ECC-1	luminal epithelium:	n/a	n/a
19	MAX	chr11:64808073-64809620	A549	lung:	n/a	n/a
20	POLR2A	chr11:64808192-64809151	HUVEC	blood vessel:	n/a	n/a
21	POLR2A	chr11:64808176-64809149	HepG2	liver:	n/a	n/a
22	POLR2A	chr11:64808061-64809322	Hela-S3	cervix:	n/a	n/a
23	CCNT2	chr11:64808170-64809287	K562	blood:	n/a	n/a
24	POLR2A	chr11:64808075-64809041	K562	blood:	n/a	n/a
25	POLR2A	chr11:64807966-64809040	U87	brain:	n/a	n/a
26	TAF7	chr11:64808289-64808996	H1-hESC	embryonic stem cell:	n/a	n/a
27	RXRA	chr11:64808287-64808664	HepG2	liver:	n/a	n/a
28	MAX	chr11:64808252-64809233	GM12878	blood:	n/a	n/a
29	RXRA	chr11:64808212-64808680	GM12878	blood:	n/a	n/a
30	YY1	chr11:64808215-64808870	SK-N-SH_RA	brain:	n/a	n/a
31	TAF1	chr11:64808064-64809084	ECC-1	luminal epithelium:	n/a	n/a
32	POLR2A	chr11:64808157-64809279	GM12878	blood:	n/a	n/a
33	SIN3AK20	chr11:64808195-64809464	PANC-1	pancreas:	n/a	n/a
34	EGR1	chr11:64808288-64808826	K562	blood:	n/a	n/a
35	ZNF263	chr11:64808074-64809275	HEK293-T-REx	kidney:	n/a	n/a
36	MYC	chr11:64808077-64809315	K562	blood:	n/a	n/a
37	POLR2A	chr11:64808117-64809111	GM18505	blood:	n/a	n/a
38	SIN3AK20	chr11:64808499-64809383	K562	blood:	n/a	n/a
39	SRF	chr11:64808293-64809104	ECC-1	luminal epithelium:	n/a	n/a
40	E2F4	chr11:64808203-64809115	Hela-S3	cervix:	n/a	chr11:64808456-64808467 chr11:64808456-64808467
41	POLR2A	chr11:64808130-64809200	MCF-7	breast:	n/a	n/a
42	NFIC	chr11:64808137-64808683	GM12878	blood:	n/a	n/a
43	POLR2A	chr11:64808638-64808914	H1-hESC	embryonic stem cell:	n/a	n/a
44	ETS1	chr11:64808209-64808719	A549	lung:	n/a	n/a
45	SMARCB1	chr11:64808317-64809435	Hela-S3	cervix:	n/a	n/a
46	TAF1	chr11:64808013-64809277	ECC-1	luminal epithelium:	n/a	n/a
47	YY1	chr11:64808204-64809241	ECC-1	luminal epithelium:	n/a	n/a
48	TAF1	chr11:64808229-64809329	HepG2	liver:	n/a	n/a
49	POLR2A	chr11:64808169-64808649	GM12892	blood:	n/a	n/a
50	E2F6	chr11:64808263-64809380	K562	blood:	n/a	chr11:64808456-64808467

No data

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64806669..64810557-chr11:64862016..64868359,8	K562	blood:
2	chr11:64793282..64795774-chr11:64807101..64811680,5	K562	blood:
3	chr11:64793697..64796700-chr11:64806482..64812345,9	MCF-7	breast:
4	chr11:64780179..64786029-chr11:64807067..64810211,7	MCF-7	breast:
5	chr11:64787088..64789367-chr11:64807052..64810027,2	MCF-7	breast:
6	chr11:64807090..64809871-chr11:64850334..64853304,4	MCF-7	breast:
7	chr11:64780338..64782626-chr11:64806994..64809935,3	K562	blood:
8	chr11:64807050..64811411-chr11:64876533..64881108,6	MCF-7	breast:
9	chr11:64644663..64647408-chr11:64807363..64809566,4	MCF-7	breast:
10	chr11:64808477..64810468-chr11:64816977..64818703,3	MCF-7	breast:
11	chr11:64807534..64810713-chr11:64846257..64849828,3	MCF-7	breast:
12	chr11:64806772..64810496-chr11:64862454..64866792,5	K562	blood:
13	chr11:64807959..64809979-chr11:64878035..64880846,2	K562	blood:
14	chr11:64808323..64810154-chr11:64871056..64873673,2	MCF-7	breast:
15	chr11:64806463..64808805-chr11:64815100..64817067,2	K562	blood:
16	chr11:64806835..64808889-chr11:64875130..64876967,2	K562	blood:
17	chr11:64806821..64808860-chr11:64936413..64939146,2	K562	blood:
18	chr11:64793793..64795353-chr11:64806843..64809654,4	MCF-7	breast:
19	chr11:64807684..64812709-chr11:64850593..64853492,4	MCF-7	breast:
20	chr11:64808483..64810483-chr11:64810664..64814353,4	K562	blood:
21	chr11:64807810..64812277-chr11:64813364..64817609,8	MCF-7	breast:
22	chr11:64793389..64797015-chr11:64806765..64809007,6	K562	blood:
23	chr11:64805658..64811611-chr11:64862545..64865451,9	MCF-7	breast:
24	chr11:64692132..64694352-chr11:64806387..64808974,2	K562	blood:
25	chr11:64804480..64810811-chr11:64850224..64856247,12	K562	blood:
26	chr11:64806922..64809393-chr11:64883452..64886674,3	MCF-7	breast:
27	chr11:64807098..64808802-chr11:64850233..64851800,2	K562	blood:
28	chr11:64806644..64812839-chr11:64862132..64865938,9	MCF-7	breast:
29	chr11:64682450..64685608-chr11:64808232..64811277,3	MCF-7	breast:
30	chr11:64807549..64809979-chr11:64878035..64880006,2	K562	blood:

No data

Variant related genes	Relation type
SAC3D1	TF binding region
ENSG00000149823	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000266123	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000168060	Chromatin interaction
ENSG00000162300	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000146670	Chromatin interaction
ENSG00000110046	Chromatin interaction
ENSG00000204710	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000273003	Chromatin interaction
ENSG00000110047	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10792455	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17146589	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2670910	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34589041	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs473587	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs481446	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs484147	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs494837	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs495820	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs495935	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs497023	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs500464	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs533164	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs533301	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs542175	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs550771	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs561524	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs584698	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs608772	0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs613352	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs633671	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs664118	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs689361	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
5	esv3324692	chr11:64806676-64811174	Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64807600-64808800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:64807600-64809400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:64807600-64809400	Active TSS	Brain Anterior Caudate	brain
4	chr11:64807800-64809600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr11:64807800-64809800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:64807800-64810000	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr11:64807800-64810000	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr11:64807800-64810400	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr11:64807800-64810600	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr11:64808000-64809000	Active TSS	Colonic Mucosa	Colon
11	chr11:64808000-64809000	Active TSS	Esophagus	oesophagus
12	chr11:64808000-64809000	Active TSS	Right Ventricle	heart
13	chr11:64808000-64809200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:64808000-64809200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:64808000-64809200	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr11:64808000-64809200	Active TSS	Duodenum Mucosa	Duodenum
17	chr11:64808000-64809200	Active TSS	Pancreas	Pancrea
18	chr11:64808000-64809200	Active TSS	Psoas Muscle	Psoas
19	chr11:64808000-64809400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:64808000-64809400	Weak transcription	Fetal Heart	heart
21	chr11:64808000-64809400	Active TSS	Fetal Stomach	stomach
22	chr11:64808000-64809400	Active TSS	Left Ventricle	heart
23	chr11:64808000-64809600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr11:64808000-64809600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:64808000-64809600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:64808000-64809600	Active TSS	Brain Cingulate Gyrus	brain
27	chr11:64808000-64809600	Active TSS	Fetal Kidney	kidney
28	chr11:64808000-64809600	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr11:64808000-64809600	Active TSS	Ovary	ovary
30	chr11:64808000-64809600	Active TSS	Rectal Smooth Muscle	rectum
31	chr11:64808000-64809800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:64808000-64809800	Active TSS	Fetal Brain Female	brain
33	chr11:64808000-64809800	Active TSS	A549	lung
34	chr11:64808000-64809800	Active TSS	NHDF-Ad	bronchial
35	chr11:64808000-64810000	Active TSS	H1 Cell Line	embryonic stem cell
36	chr11:64808000-64810000	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr11:64808000-64810000	Active TSS	HepG2	liver
38	chr11:64808000-64810200	Active TSS	H9 Cell Line	embryonic stem cell
39	chr11:64808000-64810200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:64808000-64810200	Active TSS	HUES48 Cell Line	embryonic stem cell
41	chr11:64808000-64810200	Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr11:64808000-64810200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:64808000-64810200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:64808000-64810800	Active TSS	NHLF	lung
45	chr11:64808200-64808800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:64808200-64809000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:64808200-64809000	Active TSS	Placenta Amnion	Placenta Amnion
48	chr11:64808200-64809000	Transcr. at gene 5' and 3'	Right Atrium	heart
49	chr11:64808200-64809000	Active TSS	Stomach Smooth Muscle	stomach
50	chr11:64808200-64809200	Active TSS	Primary T helper cells PMA-I stimulated	--

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