Variant report

Variant	rs10792455
Chromosome Location	chr11:64809133-64809134
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64806669..64810557-chr11:64862016..64868359,8	K562	blood:
2	chr11:64793282..64795774-chr11:64807101..64811680,5	K562	blood:
3	chr11:64793697..64796700-chr11:64806482..64812345,9	MCF-7	breast:
4	chr11:64780179..64786029-chr11:64807067..64810211,7	MCF-7	breast:
5	chr11:64787088..64789367-chr11:64807052..64810027,2	MCF-7	breast:
6	chr11:64807090..64809871-chr11:64850334..64853304,4	MCF-7	breast:
7	chr11:64780338..64782626-chr11:64806994..64809935,3	K562	blood:
8	chr11:64807050..64811411-chr11:64876533..64881108,6	MCF-7	breast:
9	chr11:64644663..64647408-chr11:64807363..64809566,4	MCF-7	breast:
10	chr11:64808477..64810468-chr11:64816977..64818703,3	MCF-7	breast:
11	chr11:64807534..64810713-chr11:64846257..64849828,3	MCF-7	breast:
12	chr11:64808945..64810714-chr11:64850630..64853153,2	K562	blood:
13	chr11:64806772..64810496-chr11:64862454..64866792,5	K562	blood:
14	chr11:64807959..64809979-chr11:64878035..64880846,2	K562	blood:
15	chr11:64808323..64810154-chr11:64871056..64873673,2	MCF-7	breast:
16	chr11:64793793..64795353-chr11:64806843..64809654,4	MCF-7	breast:
17	chr11:64807684..64812709-chr11:64850593..64853492,4	MCF-7	breast:
18	chr11:64808483..64810483-chr11:64810664..64814353,4	K562	blood:
19	chr11:64807810..64812277-chr11:64813364..64817609,8	MCF-7	breast:
20	chr11:64805658..64811611-chr11:64862545..64865451,9	MCF-7	breast:
21	chr11:64804480..64810811-chr11:64850224..64856247,12	K562	blood:
22	chr11:64808732..64812218-chr11:64877838..64879922,3	MCF-7	breast:
23	chr11:64806922..64809393-chr11:64883452..64886674,3	MCF-7	breast:
24	chr11:64806644..64812839-chr11:64862132..64865938,9	MCF-7	breast:
25	chr11:64682450..64685608-chr11:64808232..64811277,3	MCF-7	breast:
26	chr11:64807549..64809979-chr11:64878035..64880006,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146670	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000273003	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000266123	Chromatin interaction
ENSG00000168060	Chromatin interaction
ENSG00000162300	Chromatin interaction
ENSG00000110046	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10160811	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17146589	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2670910	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34589041	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs473587	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs481446	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs484147	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs494837	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs495820	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs495935	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs497023	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs500464	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs533164	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs533301	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs542175	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs550771	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs561524	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs584698	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs608772	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs613352	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs633671	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs664118	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs689361	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
5	esv3324692	chr11:64806676-64811174	Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64807600-64809400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:64807600-64809400	Active TSS	Brain Anterior Caudate	brain
3	chr11:64807800-64809600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr11:64807800-64809800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:64807800-64810000	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr11:64807800-64810000	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr11:64807800-64810400	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr11:64807800-64810600	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr11:64808000-64809200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:64808000-64809200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:64808000-64809200	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr11:64808000-64809200	Active TSS	Duodenum Mucosa	Duodenum
13	chr11:64808000-64809200	Active TSS	Pancreas	Pancrea
14	chr11:64808000-64809200	Active TSS	Psoas Muscle	Psoas
15	chr11:64808000-64809400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:64808000-64809400	Weak transcription	Fetal Heart	heart
17	chr11:64808000-64809400	Active TSS	Fetal Stomach	stomach
18	chr11:64808000-64809400	Active TSS	Left Ventricle	heart
19	chr11:64808000-64809600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:64808000-64809600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:64808000-64809600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:64808000-64809600	Active TSS	Brain Cingulate Gyrus	brain
23	chr11:64808000-64809600	Active TSS	Fetal Kidney	kidney
24	chr11:64808000-64809600	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr11:64808000-64809600	Active TSS	Ovary	ovary
26	chr11:64808000-64809600	Active TSS	Rectal Smooth Muscle	rectum
27	chr11:64808000-64809800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:64808000-64809800	Active TSS	Fetal Brain Female	brain
29	chr11:64808000-64809800	Active TSS	A549	lung
30	chr11:64808000-64809800	Active TSS	NHDF-Ad	bronchial
31	chr11:64808000-64810000	Active TSS	H1 Cell Line	embryonic stem cell
32	chr11:64808000-64810000	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr11:64808000-64810000	Active TSS	HepG2	liver
34	chr11:64808000-64810200	Active TSS	H9 Cell Line	embryonic stem cell
35	chr11:64808000-64810200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:64808000-64810200	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr11:64808000-64810200	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr11:64808000-64810200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:64808000-64810200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:64808000-64810800	Active TSS	NHLF	lung
41	chr11:64808200-64809200	Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr11:64808200-64809200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:64808200-64809200	Active TSS	Fetal Intestine Large	intestine
44	chr11:64808200-64809200	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr11:64808200-64809200	Active TSS	Rectal Mucosa Donor 31	rectum
46	chr11:64808200-64809200	Active TSS	Spleen	Spleen
47	chr11:64808200-64809200	Active TSS	K562	blood
48	chr11:64808200-64809400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:64808200-64809400	Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr11:64808200-64809400	Active TSS	Primary T cells from cord blood	blood

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