Variant report

Variant	rs17146589
Chromosome Location	chr11:64793189-64793190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64781095..64782950-chr11:64792399..64795150,2	MCF-7	breast:
2	chr11:64643878..64648186-chr11:64793107..64797470,5	K562	blood:
3	chr11:64793181..64796302-chr11:64849635..64852378,4	MCF-7	breast:
4	chr11:64792804..64795022-chr11:64876494..64879449,2	K562	blood:

Variant related genes	Relation type
ENSG00000110047	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000146670	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000162300	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000273003	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10088	0.82[CEU][hapmap]
rs10160811	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10792455	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1196051	0.82[CEU][hapmap]
rs2670910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34589041	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs473587	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481446	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs484147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs494837	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs495820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs495935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs497023	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533164	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs533301	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs542175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs550771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs561524	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs584698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs608772	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs613352	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs633671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs689361	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7939766	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
5	nsv983034	chr11:64792946-64795254	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64782400-64794400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:64782600-64794200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:64782600-64794400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:64782600-64794400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:64782600-64794400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:64782600-64794400	Weak transcription	Small Intestine	intestine
7	chr11:64782600-64794400	Weak transcription	HSMMtube	muscle
8	chr11:64782600-64794400	Weak transcription	HUVEC	blood vessel
9	chr11:64782600-64794400	Weak transcription	NH-A	brain
10	chr11:64782600-64794400	Weak transcription	NHDF-Ad	bronchial
11	chr11:64782600-64794600	Weak transcription	Right Atrium	heart
12	chr11:64783000-64794400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:64783000-64794400	Weak transcription	Stomach Mucosa	stomach
14	chr11:64783800-64794400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr11:64784000-64794400	Weak transcription	Primary B cells from cord blood	blood
16	chr11:64784000-64794400	Weak transcription	Fetal Brain Male	brain
17	chr11:64784200-64794400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:64786400-64794200	Weak transcription	Osteobl	bone
19	chr11:64786400-64794400	Weak transcription	HSMM	muscle
20	chr11:64786600-64794400	Weak transcription	HMEC	breast
21	chr11:64786600-64794600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:64787600-64794400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:64787600-64794400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:64787600-64794400	Weak transcription	Fetal Kidney	kidney
25	chr11:64787600-64794400	Weak transcription	GM12878-XiMat	blood
26	chr11:64787800-64794400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:64787800-64794400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:64788200-64794600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:64788800-64794200	Weak transcription	NHEK	skin
30	chr11:64788800-64794400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:64788800-64794800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr11:64789000-64793800	Weak transcription	Hela-S3	cervix
33	chr11:64789000-64794200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:64789000-64794400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:64789200-64794200	Weak transcription	Esophagus	oesophagus
36	chr11:64789200-64794400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr11:64789200-64794600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:64789400-64794200	Weak transcription	NHLF	lung
39	chr11:64789400-64794400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr11:64789400-64794400	Weak transcription	Colon Smooth Muscle	Colon
41	chr11:64789400-64794400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:64789600-64793800	Weak transcription	A549	lung
43	chr11:64789600-64794400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:64789600-64794400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:64789600-64794400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:64789600-64794400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:64789600-64794400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:64789600-64794600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:64789600-64794600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr11:64789600-64794600	Weak transcription	Right Ventricle	heart

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