Variant report

Variant	rs10161513
Chromosome Location	chr12:105705815-105705816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11112410	1.00[ASN][1000 genomes]
rs11112452	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112522	1.00[ASN][1000 genomes]
rs11112526	1.00[ASN][1000 genomes]
rs11112530	1.00[ASN][1000 genomes]
rs11112531	1.00[ASN][1000 genomes]
rs11112532	1.00[ASN][1000 genomes]
rs12299366	1.00[ASN][1000 genomes]
rs12299391	1.00[ASN][1000 genomes]
rs12301914	1.00[ASN][1000 genomes]
rs12304384	1.00[ASN][1000 genomes]
rs12305766	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12311156	1.00[ASN][1000 genomes]
rs12317637	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12317804	1.00[ASN][1000 genomes]
rs12321199	1.00[ASN][1000 genomes]
rs12321518	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12424095	1.00[ASN][1000 genomes]
rs12424191	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12424709	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17037098	1.00[ASN][1000 genomes]
rs58780154	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59320697	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59593474	1.00[ASN][1000 genomes]
rs60999193	1.00[ASN][1000 genomes]
rs7132816	1.00[ASN][1000 genomes]
rs7133728	1.00[ASN][1000 genomes]
rs7136270	1.00[ASN][1000 genomes]
rs7136306	1.00[ASN][1000 genomes]
rs7300130	1.00[ASN][1000 genomes]
rs7302842	1.00[ASN][1000 genomes]
rs7305406	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7306679	1.00[ASN][1000 genomes]
rs73181810	1.00[ASN][1000 genomes]
rs73181818	1.00[ASN][1000 genomes]
rs73181822	1.00[ASN][1000 genomes]
rs73181825	1.00[ASN][1000 genomes]
rs73181843	1.00[ASN][1000 genomes]
rs73181852	1.00[ASN][1000 genomes]
rs73181856	1.00[ASN][1000 genomes]
rs73181857	1.00[ASN][1000 genomes]
rs73181860	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73181869	1.00[ASN][1000 genomes]
rs7971630	1.00[ASN][1000 genomes]
rs7975115	1.00[ASN][1000 genomes]
rs9971795	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3394212	chr12:105693734-105708035	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	esv3358347	chr12:105693757-105707693	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105692200-105708000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr12:105695400-105708200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:105695800-105709200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr12:105696200-105709400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:105701800-105709400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr12:105702600-105706200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:105702600-105709400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:105704000-105706400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:105704200-105706400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:105704200-105706400	Enhancers	Osteobl	bone
11	chr12:105704200-105711000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr12:105704400-105706400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:105704800-105706400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr12:105705200-105706200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:105705200-105709600	Weak transcription	Aorta	Aorta
16	chr12:105705400-105706400	Enhancers	NHDF-Ad	bronchial
17	chr12:105705400-105708400	Weak transcription	Stomach Mucosa	stomach
18	chr12:105705400-105708800	Weak transcription	A549	lung
19	chr12:105705800-105706000	Weak transcription	NHEK	skin
20	chr12:105705800-105706200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr12:105705800-105706200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr12:105705800-105706200	Weak transcription	Hela-S3	cervix
23	chr12:105705800-105706200	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links