Variant report

Variant	rs73181825
Chromosome Location	chr12:105653284-105653285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10161513	1.00[ASN][1000 genomes]
rs11112410	1.00[ASN][1000 genomes]
rs11112452	1.00[ASN][1000 genomes]
rs11112522	1.00[ASN][1000 genomes]
rs11112526	1.00[ASN][1000 genomes]
rs11112530	1.00[ASN][1000 genomes]
rs11112531	1.00[ASN][1000 genomes]
rs11112532	1.00[ASN][1000 genomes]
rs12299366	1.00[ASN][1000 genomes]
rs12299391	1.00[ASN][1000 genomes]
rs12301914	1.00[ASN][1000 genomes]
rs12304384	1.00[ASN][1000 genomes]
rs12305766	1.00[ASN][1000 genomes]
rs12311156	1.00[ASN][1000 genomes]
rs12317637	1.00[ASN][1000 genomes]
rs12317804	1.00[ASN][1000 genomes]
rs12321199	1.00[ASN][1000 genomes]
rs12321518	1.00[ASN][1000 genomes]
rs12424095	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12424191	1.00[ASN][1000 genomes]
rs12424709	1.00[ASN][1000 genomes]
rs17037098	1.00[ASN][1000 genomes]
rs35149056	0.88[EUR][1000 genomes]
rs3910856	0.85[EUR][1000 genomes]
rs58780154	1.00[ASN][1000 genomes]
rs59320697	1.00[ASN][1000 genomes]
rs59593474	1.00[ASN][1000 genomes]
rs60999193	1.00[ASN][1000 genomes]
rs7132816	1.00[ASN][1000 genomes]
rs7133728	1.00[ASN][1000 genomes]
rs7136270	1.00[ASN][1000 genomes]
rs7136306	1.00[ASN][1000 genomes]
rs7300130	1.00[ASN][1000 genomes]
rs7302842	1.00[ASN][1000 genomes]
rs7305406	1.00[ASN][1000 genomes]
rs7306679	1.00[ASN][1000 genomes]
rs73179970	0.85[EUR][1000 genomes]
rs73179974	0.85[EUR][1000 genomes]
rs73181810	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181818	1.00[ASN][1000 genomes]
rs73181822	1.00[ASN][1000 genomes]
rs73181843	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181852	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181856	1.00[ASN][1000 genomes]
rs73181857	1.00[ASN][1000 genomes]
rs73181869	1.00[ASN][1000 genomes]
rs7971630	1.00[ASN][1000 genomes]
rs7975115	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971795	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105647000-105653400	Enhancers	NHLF	lung
2	chr12:105647400-105653400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr12:105648200-105653800	Enhancers	NHDF-Ad	bronchial
4	chr12:105648200-105657400	Weak transcription	Esophagus	oesophagus
5	chr12:105651400-105653800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:105651800-105653400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:105651800-105653800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:105652600-105657800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:105652600-105661400	Weak transcription	HSMMtube	muscle
10	chr12:105652800-105654200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:105653200-105656000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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