Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105828121..105830323-chr12:105840483..105843447,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10161513	1.00[ASN][1000 genomes]
rs10861426	0.86[AFR][1000 genomes]
rs11112452	1.00[ASN][1000 genomes]
rs11112522	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112526	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112530	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112531	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112532	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12305766	1.00[ASN][1000 genomes]
rs12317637	1.00[ASN][1000 genomes]
rs12321518	1.00[ASN][1000 genomes]
rs12424095	1.00[ASN][1000 genomes]
rs12424191	1.00[ASN][1000 genomes]
rs12424709	1.00[ASN][1000 genomes]
rs1347100	0.83[AFR][1000 genomes]
rs17037098	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2163720	0.86[AFR][1000 genomes]
rs4015321	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs58780154	1.00[ASN][1000 genomes]
rs59320697	1.00[ASN][1000 genomes]
rs7135404	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs7136270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7305406	1.00[ASN][1000 genomes]
rs7306679	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181818	1.00[ASN][1000 genomes]
rs73181822	1.00[ASN][1000 genomes]
rs73181825	1.00[ASN][1000 genomes]
rs73181843	1.00[ASN][1000 genomes]
rs73181852	1.00[ASN][1000 genomes]
rs73181856	1.00[ASN][1000 genomes]
rs73181857	1.00[ASN][1000 genomes]
rs73181869	1.00[ASN][1000 genomes]
rs9971795	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105813000-105832400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:105820600-105832600	Weak transcription	Gastric	stomach
3	chr12:105826000-105829600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:105827200-105829400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:105828200-105832600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr12:105828600-105832400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:105828600-105838200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:105828800-105831000	Weak transcription	HUVEC	blood vessel

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