Variant report

Variant	rs4015321
Chromosome Location	chr12:105840103-105840104
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105837457..105842094-chr12:106531449..106535531,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000074590	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10861426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10861429	0.97[ASN][1000 genomes]
rs11112525	0.83[ASN][1000 genomes]
rs11615511	0.97[ASN][1000 genomes]
rs12817201	0.85[ASN][1000 genomes]
rs1347100	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1816394	0.94[ASN][1000 genomes]
rs1816395	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2163720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7135404	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7136270	0.86[AFR][1000 genomes]
rs7136306	0.86[AFR][1000 genomes]
rs7307345	0.97[ASN][1000 genomes]
rs7970980	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1045689	chr12:105836970-105879110	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105836600-105840600	Enhancers	HSMMtube	muscle
2	chr12:105836800-105840200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr12:105837000-105840400	Enhancers	HSMM	muscle
4	chr12:105837400-105840400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:105837400-105840600	Enhancers	HUVEC	blood vessel
6	chr12:105837600-105840400	Enhancers	NHEK	skin
7	chr12:105837800-105840200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr12:105837800-105840400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:105838200-105840200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:105838200-105840400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:105838200-105840400	Enhancers	HMEC	breast
12	chr12:105838200-105845400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:105838400-105840400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:105838600-105841400	Enhancers	Hela-S3	cervix
15	chr12:105838800-105840200	Enhancers	Fetal Intestine Small	intestine
16	chr12:105839600-105840200	Enhancers	Fetal Intestine Large	intestine
17	chr12:105839600-105840200	Enhancers	NH-A	brain
18	chr12:105839800-105840200	Enhancers	Placenta	Placenta
19	chr12:105840000-105840600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:105840000-105841000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr12:105840000-105841200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr12:105840000-105843200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr12:105840000-105846400	Weak transcription	Fetal Muscle Leg	muscle

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