Variant report

Variant	rs7135404
Chromosome Location	chr12:105841605-105841606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10861426	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10861429	0.98[ASN][1000 genomes]
rs11112525	0.84[ASN][1000 genomes]
rs11615511	0.98[ASN][1000 genomes]
rs12817201	0.86[ASN][1000 genomes]
rs1347100	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1816394	0.95[ASN][1000 genomes]
rs1816395	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2163720	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4015321	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7136270	0.85[AFR][1000 genomes]
rs7136306	0.85[AFR][1000 genomes]
rs7307345	0.98[ASN][1000 genomes]
rs7970980	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1045689	chr12:105836970-105879110	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105838200-105845400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:105840000-105843200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr12:105840000-105846400	Weak transcription	Fetal Muscle Leg	muscle
4	chr12:105840200-105844600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr12:105840400-105843000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:105840400-105843000	Weak transcription	HSMM	muscle
7	chr12:105840400-105848600	Weak transcription	NHEK	skin
8	chr12:105840600-105842800	Weak transcription	HSMMtube	muscle
9	chr12:105840600-105844800	Weak transcription	HUVEC	blood vessel
10	chr12:105840600-105848400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:105841600-105841800	Enhancers	A549	lung
12	chr12:105841600-105850400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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