Variant report

Variant	rs7307345
Chromosome Location	chr12:105845159-105845160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10861426	0.97[ASN][1000 genomes]
rs10861429	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112525	0.83[ASN][1000 genomes]
rs11615511	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12817201	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1347100	0.99[ASN][1000 genomes]
rs1816394	0.94[ASN][1000 genomes]
rs1816395	0.92[ASN][1000 genomes]
rs2163720	0.98[ASN][1000 genomes]
rs4015321	0.97[ASN][1000 genomes]
rs7135404	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7970980	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1045689	chr12:105836970-105879110	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7307345	ANO4	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105838200-105845400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:105840000-105846400	Weak transcription	Fetal Muscle Leg	muscle
3	chr12:105840400-105848600	Weak transcription	NHEK	skin
4	chr12:105840600-105848400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:105841600-105850400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:105844200-105845800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:105844400-105845800	Enhancers	HSMM	muscle
8	chr12:105844400-105846000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:105844400-105847400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:105844600-105845800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr12:105844600-105845800	Enhancers	Osteobl	bone
12	chr12:105844600-105846000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:105844800-105845400	Enhancers	HUVEC	blood vessel
14	chr12:105844800-105845600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr12:105844800-105845800	Enhancers	HSMMtube	muscle
16	chr12:105844800-105846000	Enhancers	NHDF-Ad	bronchial
17	chr12:105845000-105845600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:105845000-105845800	Enhancers	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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