Variant report

Variant	rs10165326
Chromosome Location	chr2:100985822-100985823
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100937836..100939384-chr2:100985447..100988278,2	K562	blood:

Variant related genes	Relation type
ENSG00000170500	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10186689	0.85[ASN][1000 genomes]
rs10188009	0.85[ASN][1000 genomes]
rs10191099	0.85[ASN][1000 genomes]
rs10192741	0.85[ASN][1000 genomes]
rs10194087	0.85[ASN][1000 genomes]
rs10194280	0.85[ASN][1000 genomes]
rs10207566	0.85[ASN][1000 genomes]
rs10210458	0.85[ASN][1000 genomes]
rs11899975	0.86[ASN][1000 genomes]
rs11902829	0.96[ASN][1000 genomes]
rs13415850	0.85[ASN][1000 genomes]
rs1465829	0.89[ASN][1000 genomes]
rs17024023	0.86[ASN][1000 genomes]
rs17024153	0.93[ASN][1000 genomes]
rs17024203	0.93[ASN][1000 genomes]
rs17024207	0.89[ASN][1000 genomes]
rs2309799	0.86[ASN][1000 genomes]
rs28485289	0.85[ASN][1000 genomes]
rs28631885	0.85[ASN][1000 genomes]
rs28651883	0.82[ASN][1000 genomes]
rs2871338	0.86[ASN][1000 genomes]
rs3748934	0.89[ASN][1000 genomes]
rs4149522	0.89[ASN][1000 genomes]
rs57699256	0.86[ASN][1000 genomes]
rs57758873	0.81[ASN][1000 genomes]
rs58397194	0.81[ASN][1000 genomes]
rs58552292	0.93[ASN][1000 genomes]
rs58742261	0.93[ASN][1000 genomes]
rs59193721	0.85[ASN][1000 genomes]
rs59388202	0.89[ASN][1000 genomes]
rs59494003	0.82[ASN][1000 genomes]
rs60458261	0.85[ASN][1000 genomes]
rs61429123	0.85[ASN][1000 genomes]
rs6542928	0.85[ASN][1000 genomes]
rs6734881	0.85[ASN][1000 genomes]
rs72960174	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv963673	chr2:100971453-100986967	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv874701	chr2:100976139-101023261	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100983600-100986200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:100985800-100986200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:100985800-100987000	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links