Variant report

Variant	rs59193721
Chromosome Location	chr2:100940233-100940234
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr2:100940119-100940250	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:100939645..100941794-chr2:101040138..101041675,2	MCF-7	breast:
2	chr2:100939441..100941644-chr2:100962482..100964041,2	K562	blood:
3	chr2:100940073..100942309-chr2:101029977..101032288,2	K562	blood:
4	chr2:100104533..100107300-chr2:100936927..100940750,3	MCF-7	breast:
5	chr2:100924962..100929082-chr2:100936842..100940898,4	K562	blood:
6	chr2:100940179..100941697-chr2:100950006..100952146,2	MCF-7	breast:
7	chr2:100924962..100929454-chr2:100936842..100940898,4	K562	blood:
8	chr2:100937085..100941836-chr2:101033510..101036438,4	MCF-7	breast:
9	chr2:100940171..100942134-chr2:100989571..100992092,2	MCF-7	breast:

No data

Variant related genes	Relation type
LONRF2	TF binding region
ENSG00000115526	Chromatin interaction
ENSG00000170500	Chromatin interaction
ENSG00000135945	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10165326	0.85[ASN][1000 genomes]
rs10169580	0.93[ASN][1000 genomes]
rs10186689	1.00[ASN][1000 genomes]
rs10188009	1.00[ASN][1000 genomes]
rs10191099	1.00[ASN][1000 genomes]
rs10192741	1.00[ASN][1000 genomes]
rs10194087	1.00[ASN][1000 genomes]
rs10194280	1.00[ASN][1000 genomes]
rs10205784	0.93[ASN][1000 genomes]
rs10207566	1.00[ASN][1000 genomes]
rs10210458	1.00[ASN][1000 genomes]
rs11899975	0.85[ASN][1000 genomes]
rs11902829	0.89[ASN][1000 genomes]
rs13415850	1.00[ASN][1000 genomes]
rs1465829	0.81[ASN][1000 genomes]
rs17024023	0.85[ASN][1000 genomes]
rs17024153	0.85[ASN][1000 genomes]
rs17024207	0.81[ASN][1000 genomes]
rs2309799	0.85[ASN][1000 genomes]
rs28485289	1.00[ASN][1000 genomes]
rs28631885	1.00[ASN][1000 genomes]
rs28651883	0.89[ASN][1000 genomes]
rs2871338	0.85[ASN][1000 genomes]
rs3748934	0.81[ASN][1000 genomes]
rs4149522	0.81[ASN][1000 genomes]
rs57231149	0.93[ASN][1000 genomes]
rs57699256	0.85[ASN][1000 genomes]
rs58552292	0.92[ASN][1000 genomes]
rs58742261	0.92[ASN][1000 genomes]
rs59388202	0.81[ASN][1000 genomes]
rs59494003	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs60458261	1.00[ASN][1000 genomes]
rs61429123	1.00[ASN][1000 genomes]
rs6542928	1.00[ASN][1000 genomes]
rs6734881	1.00[ASN][1000 genomes]
rs72960174	0.82[ASN][1000 genomes]
rs995133	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv2753837	chr2:100928086-100955814	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3323401	chr2:100935920-100940518	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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