Variant report

Variant	rs58552292
Chromosome Location	chr2:100966139-100966140
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10165326	0.93[ASN][1000 genomes]
rs10169580	0.85[ASN][1000 genomes]
rs10186689	0.92[ASN][1000 genomes]
rs10188009	0.92[ASN][1000 genomes]
rs10191099	0.92[ASN][1000 genomes]
rs10192741	0.92[ASN][1000 genomes]
rs10194087	0.92[ASN][1000 genomes]
rs10194280	0.92[ASN][1000 genomes]
rs10205784	0.85[ASN][1000 genomes]
rs10207566	0.92[ASN][1000 genomes]
rs10210458	0.92[ASN][1000 genomes]
rs11899975	0.93[ASN][1000 genomes]
rs11902829	0.96[ASN][1000 genomes]
rs13415850	0.92[ASN][1000 genomes]
rs1465829	0.88[ASN][1000 genomes]
rs17024023	0.93[ASN][1000 genomes]
rs17024153	0.92[ASN][1000 genomes]
rs17024203	0.85[ASN][1000 genomes]
rs17024207	0.88[ASN][1000 genomes]
rs2309799	0.93[ASN][1000 genomes]
rs28485289	0.92[ASN][1000 genomes]
rs28631885	0.92[ASN][1000 genomes]
rs28651883	0.89[ASN][1000 genomes]
rs2871338	0.93[ASN][1000 genomes]
rs3748934	0.88[ASN][1000 genomes]
rs4149522	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs57231149	0.85[ASN][1000 genomes]
rs57699256	0.93[ASN][1000 genomes]
rs57758873	0.81[ASN][1000 genomes]
rs58397194	0.81[ASN][1000 genomes]
rs58742261	1.00[ASN][1000 genomes]
rs59193721	0.92[ASN][1000 genomes]
rs59388202	0.88[ASN][1000 genomes]
rs59494003	0.89[ASN][1000 genomes]
rs60458261	0.92[ASN][1000 genomes]
rs61429123	0.92[ASN][1000 genomes]
rs6542928	0.92[ASN][1000 genomes]
rs6734881	0.92[ASN][1000 genomes]
rs72960174	0.89[ASN][1000 genomes]
rs995133	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100956800-100967200	Weak transcription	Gastric	stomach
2	chr2:100963400-100966800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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