Variant report

Variant	rs10167988
Chromosome Location	chr2:72838332-72838333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10176180	0.80[AFR][1000 genomes]
rs10186172	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10188854	0.80[AFR][1000 genomes]
rs10197127	0.85[AFR][1000 genomes]
rs12105339	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13398051	0.81[AFR][1000 genomes]
rs13401801	0.85[AFR][1000 genomes]
rs13426691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13431249	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv834257	chr2:72701083-72853548	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72831000-72839800	Weak transcription	Brain Substantia Nigra	brain
2	chr2:72831000-72841400	Weak transcription	Brain Anterior Caudate	brain
3	chr2:72831000-72841400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:72831400-72840000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:72831800-72841800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:72834000-72843600	Weak transcription	Fetal Intestine Small	intestine
7	chr2:72835400-72841400	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:72836800-72843600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:72837000-72839600	Weak transcription	Fetal Lung	lung
10	chr2:72837600-72839800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:72838200-72841800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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