Variant report

Variant	rs10186172
Chromosome Location	chr2:72889289-72889290
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10167988	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10197127	0.91[AFR][1000 genomes]
rs12105339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13398051	0.87[AFR][1000 genomes]
rs13401801	0.91[AFR][1000 genomes]
rs13426691	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13431249	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874264	chr2:72593243-72901170	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72858400-72904000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:72866800-72902600	Weak transcription	Left Ventricle	heart
3	chr2:72873000-72903800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:72884600-72891200	Weak transcription	Placenta	Placenta
5	chr2:72886000-72891400	Weak transcription	Ovary	ovary
6	chr2:72889000-72891400	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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