Variant report

Variant	rs10169714
Chromosome Location	chr2:73808773-73808774
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73807379..73809875-chr2:73818968..73821012,2	MCF-7	breast:
2	chr2:73806876..73809053-chr2:73809363..73811205,2	K562	blood:

Extended variants
information (count: 196 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs10168931	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10169213	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170786	0.93[EUR][1000 genomes]
rs10170849	0.88[EUR][1000 genomes]
rs10173534	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178409	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10178678	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179134	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10181563	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10183818	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185080	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186501	0.85[EUR][1000 genomes]
rs10187192	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187416	0.86[EUR][1000 genomes]
rs10189574	0.85[EUR][1000 genomes]
rs10190219	0.94[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193972	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs10195357	0.81[EUR][1000 genomes]
rs10195358	0.81[EUR][1000 genomes]
rs10197409	0.95[EUR][1000 genomes]
rs10197755	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10198549	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199224	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206899	1.00[CEU][hapmap]
rs10207220	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207264	0.86[EUR][1000 genomes]
rs10209517	0.89[EUR][1000 genomes]
rs10469966	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496191	0.84[EUR][1000 genomes]
rs10496192	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10496193	0.92[EUR][1000 genomes]
rs1052162	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs11126404	0.88[EUR][1000 genomes]
rs1114380	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674602	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11675958	1.00[ASN][1000 genomes]
rs11676385	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679594	1.00[ASN][1000 genomes]
rs11679809	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680965	1.00[ASN][1000 genomes]
rs11686019	0.89[EUR][1000 genomes]
rs11686541	1.00[ASN][1000 genomes]
rs11689164	1.00[ASN][1000 genomes]
rs11689588	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693586	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693588	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11884776	0.89[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11893881	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899740	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899902	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901272	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs11903916	0.93[EUR][1000 genomes]
rs13383871	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13384756	1.00[ASN][1000 genomes]
rs13384952	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385564	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13391258	0.82[EUR][1000 genomes]
rs13391552	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392691	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392872	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398956	0.94[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13400985	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409366	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409668	0.88[EUR][1000 genomes]
rs13410232	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13411311	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13421462	0.94[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427832	0.89[EUR][1000 genomes]
rs13428235	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13431267	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13431529	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13432605	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13538	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs1403284	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534471	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs1589576	1.00[ASN][1000 genomes]
rs17008991	1.00[JPT][hapmap]
rs17009149	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009159	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349321	1.00[ASN][1000 genomes]
rs1881245	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs1918863	0.83[EUR][1000 genomes]
rs2056486	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs2140195	0.86[EUR][1000 genomes]
rs2421550	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs2421552	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421555	0.93[EUR][1000 genomes]
rs2421577	0.89[EUR][1000 genomes]
rs2567598	1.00[ASN][1000 genomes]
rs2567601	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2567602	1.00[ASN][1000 genomes]
rs2567603	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28879089	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901438	0.84[EUR][1000 genomes]
rs3738848	0.85[EUR][1000 genomes]
rs3813227	0.84[EUR][1000 genomes]
rs4547554	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56014217	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56154726	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56672945	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58603761	0.86[EUR][1000 genomes]
rs60844734	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62149774	1.00[ASN][1000 genomes]
rs62149777	1.00[ASN][1000 genomes]
rs62149781	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62149782	1.00[ASN][1000 genomes]
rs62149804	1.00[ASN][1000 genomes]
rs62151564	1.00[ASN][1000 genomes]
rs62151646	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62151652	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62153182	1.00[ASN][1000 genomes]
rs62153183	1.00[ASN][1000 genomes]
rs6546835	0.84[EUR][1000 genomes]
rs6546836	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs6546837	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs6546838	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs6546839	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs6546845	0.92[EUR][1000 genomes]
rs6546847	0.94[EUR][1000 genomes]
rs6546849	0.89[EUR][1000 genomes]
rs6546850	0.90[EUR][1000 genomes]
rs6546851	0.90[EUR][1000 genomes]
rs6546852	0.90[EUR][1000 genomes]
rs6546853	0.90[EUR][1000 genomes]
rs6546854	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546856	0.86[EUR][1000 genomes]
rs6546857	0.94[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546858	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6546859	0.89[EUR][1000 genomes]
rs6546860	0.89[EUR][1000 genomes]
rs6546861	0.82[EUR][1000 genomes]
rs6704782	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6705489	0.94[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6705977	0.82[EUR][1000 genomes]
rs6707722	0.84[EUR][1000 genomes]
rs6708766	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6710438	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6711001	0.83[EUR][1000 genomes]
rs6711033	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6718843	0.82[EUR][1000 genomes]
rs6719753	0.86[EUR][1000 genomes]
rs6723247	0.89[EUR][1000 genomes]
rs6724782	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs6726694	0.89[EUR][1000 genomes]
rs6735946	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6736866	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740223	0.84[EUR][1000 genomes]
rs6740766	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6744398	1.00[ASN][1000 genomes]
rs6745368	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745480	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6753344	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755217	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755241	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756885	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756987	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs6759452	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73947808	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7424690	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558944	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564890	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566364	0.89[EUR][1000 genomes]
rs7566385	0.87[EUR][1000 genomes]
rs7567585	0.87[EUR][1000 genomes]
rs7572722	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576245	0.90[EUR][1000 genomes]
rs7580750	0.94[EUR][1000 genomes]
rs7580825	0.94[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7582051	1.00[ASN][1000 genomes]
rs7582606	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583255	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584575	0.84[EUR][1000 genomes]
rs7585004	0.84[EUR][1000 genomes]
rs7585124	0.84[EUR][1000 genomes]
rs7586463	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587577	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7588169	0.86[EUR][1000 genomes]
rs7594511	0.94[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7596773	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7598396	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7598419	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7598946	0.84[EUR][1000 genomes]
rs7602980	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603647	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7604682	0.94[EUR][1000 genomes]
rs7607014	0.87[EUR][1000 genomes]
rs7607892	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309473	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9653557	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9749859	0.93[EUR][1000 genomes]
rs9750915	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9807961	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428051	chr2:73717032-74030067	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2757806	chr2:73717032-74078592	Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv2759060	chr2:73717032-74078592	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv874267	chr2:73717656-73857002	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10169714	ALMS1P	cis	Skin Sun Exposed Lower leg	GTEx
rs10169714	ALMS1	Cis_1M	lymphoblastoid	RTeQTL
rs10169714	ALMS1P	cis	Nerve Tibial	GTEx
rs10169714	ALMS1P	cis	Whole Blood	GTEx
rs10169714	ALMS1	cis	normal skin	skin_eQTL
rs10169714	ALMS1P	cis	Thyroid	GTEx

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73759600-73828000	Weak transcription	Pancreas	Pancrea
2	chr2:73760600-73828000	Weak transcription	Right Ventricle	heart
3	chr2:73765800-73815400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:73765800-73837800	Weak transcription	Fetal Brain Male	brain
5	chr2:73775600-73811400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:73776000-73821600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:73778600-73811400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:73782200-73811400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:73785200-73815400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:73785400-73838200	Weak transcription	Psoas Muscle	Psoas
11	chr2:73786200-73815400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:73787400-73809800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr2:73788200-73815200	Weak transcription	Brain Angular Gyrus	brain
14	chr2:73792200-73828600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:73792600-73820800	Weak transcription	HSMMtube	muscle
16	chr2:73797400-73828400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr2:73798600-73808800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr2:73800000-73815400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:73800000-73815400	Weak transcription	Ovary	ovary
20	chr2:73800400-73815400	Weak transcription	Lung	lung
21	chr2:73800400-73827600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:73800600-73809200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr2:73800600-73809600	Weak transcription	Placenta	Placenta
24	chr2:73800600-73821200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:73800600-73821600	Weak transcription	Primary B cells from cord blood	blood
26	chr2:73800600-73822400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:73800600-73828000	Weak transcription	Gastric	stomach
28	chr2:73800600-73828400	Weak transcription	Aorta	Aorta
29	chr2:73800600-73828600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr2:73800800-73809000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr2:73800800-73809600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr2:73800800-73810600	Weak transcription	NH-A	brain
33	chr2:73800800-73811800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr2:73800800-73812600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:73800800-73827800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr2:73800800-73827800	Weak transcription	Left Ventricle	heart
37	chr2:73800800-73828000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr2:73800800-73828200	Weak transcription	Brain Substantia Nigra	brain
39	chr2:73800800-73828800	Weak transcription	HSMM	muscle
40	chr2:73801000-73809400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr2:73801000-73844000	Weak transcription	Fetal Kidney	kidney
42	chr2:73801200-73809200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr2:73801200-73813000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr2:73804800-73808800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr2:73805600-73811200	Weak transcription	Esophagus	oesophagus
46	chr2:73806800-73808800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr2:73806800-73808800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
48	chr2:73806800-73808800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr2:73807000-73828200	Weak transcription	Fetal Thymus	thymus
50	chr2:73807200-73808800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links