Variant report

Variant	rs10170474
Chromosome Location	chr2:141662215-141662216
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10191493	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1030508	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs10496859	0.83[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap]
rs11893327	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs12469352	0.86[EUR][1000 genomes]
rs12469393	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1366802	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1429343	0.81[CHB][hapmap]
rs1429347	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1469481	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.80[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2380943	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs4426471	0.91[EUR][1000 genomes]
rs6714678	0.81[CEU][hapmap]
rs6737803	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875208	chr2:141657878-141795620	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141653600-141662800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:141662200-141662600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:141662200-141662800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:141662200-141663400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:141662200-141663600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:141662200-141663800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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