Variant report

Variant	rs2380943
Chromosome Location	chr2:141641929-141641930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10170474	0.85[CEU][hapmap];0.86[CHB][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10191493	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1030508	0.89[CEU][hapmap]
rs10496859	0.89[CEU][hapmap];0.81[CHB][hapmap]
rs11893327	0.86[CEU][hapmap]
rs12469352	0.88[EUR][1000 genomes]
rs12469393	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1366802	0.85[CEU][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1429347	0.85[EUR][1000 genomes]
rs1469481	0.92[CEU][hapmap];0.82[CHB][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4426471	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6737803	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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