Variant report

Variant	rs10171224
Chromosome Location	chr2:56926626-56926627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10165892	1.00[EUR][1000 genomes]
rs10176983	1.00[EUR][1000 genomes]
rs10178661	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10181900	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10183100	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10195595	1.00[EUR][1000 genomes]
rs10200031	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10202443	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10208606	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11897129	1.00[EUR][1000 genomes]
rs12328751	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13382467	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13384170	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13384989	1.00[EUR][1000 genomes]
rs13385548	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13386206	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13386727	1.00[EUR][1000 genomes]
rs13387143	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13392858	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13398719	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13407080	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13407738	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13411174	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13412157	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13417902	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13418673	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13419160	1.00[EUR][1000 genomes]
rs13431398	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048166	1.00[EUR][1000 genomes]
rs17048167	1.00[EUR][1000 genomes]
rs17048189	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048223	1.00[EUR][1000 genomes]
rs2067828	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2081427	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2216493	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28673216	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28678883	1.00[EUR][1000 genomes]
rs2904312	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55923854	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59211909	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59956872	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6740161	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940723	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940724	1.00[EUR][1000 genomes]
rs73940726	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940728	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7586424	1.00[EUR][1000 genomes]
rs7595192	1.00[EUR][1000 genomes]
rs7599191	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv874179	chr2:56817927-56957466	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv874180	chr2:56822558-56957466	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv582058	chr2:56892585-57016392	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv582059	chr2:56892585-57175087	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv535727	chr2:56895497-57059359	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1007347	chr2:56904928-57100439	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56914600-56928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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