Variant report

Variant	rs10195595
Chromosome Location	chr2:56935122-56935123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10165892	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10171224	1.00[EUR][1000 genomes]
rs10176983	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10178661	1.00[EUR][1000 genomes]
rs10181083	1.00[AMR][1000 genomes]
rs10181900	1.00[EUR][1000 genomes]
rs10182461	0.85[AMR][1000 genomes]
rs10183100	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10186037	0.85[AMR][1000 genomes]
rs10188327	0.85[AMR][1000 genomes]
rs10193415	0.85[AMR][1000 genomes]
rs10198695	1.00[AMR][1000 genomes]
rs10200031	1.00[EUR][1000 genomes]
rs10202443	1.00[EUR][1000 genomes]
rs10203056	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10208606	1.00[EUR][1000 genomes]
rs10208926	1.00[AMR][1000 genomes]
rs11897129	1.00[EUR][1000 genomes]
rs12328751	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13382467	1.00[EUR][1000 genomes]
rs13384170	1.00[EUR][1000 genomes]
rs13384215	0.85[AMR][1000 genomes]
rs13384616	0.85[AMR][1000 genomes]
rs13384989	1.00[EUR][1000 genomes]
rs13385548	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13386206	1.00[EUR][1000 genomes]
rs13386727	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13387143	1.00[EUR][1000 genomes]
rs13390034	1.00[AMR][1000 genomes]
rs13392858	1.00[EUR][1000 genomes]
rs13393598	0.85[AMR][1000 genomes]
rs13395773	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13398719	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13407080	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13407738	1.00[EUR][1000 genomes]
rs13411174	1.00[EUR][1000 genomes]
rs13412157	1.00[EUR][1000 genomes]
rs13415120	1.00[AMR][1000 genomes]
rs13417902	1.00[EUR][1000 genomes]
rs13418673	1.00[EUR][1000 genomes]
rs13419160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13431398	1.00[EUR][1000 genomes]
rs17048166	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048167	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048189	1.00[EUR][1000 genomes]
rs17048223	1.00[EUR][1000 genomes]
rs17048350	1.00[AMR][1000 genomes]
rs17048370	1.00[AMR][1000 genomes]
rs17048373	0.85[AMR][1000 genomes]
rs17048375	0.85[AMR][1000 genomes]
rs17048398	0.85[AMR][1000 genomes]
rs17048400	0.85[AMR][1000 genomes]
rs2067828	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2081427	1.00[EUR][1000 genomes]
rs2216493	1.00[EUR][1000 genomes]
rs28673216	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28678883	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2904312	1.00[EUR][1000 genomes]
rs55923854	1.00[EUR][1000 genomes]
rs59211909	1.00[EUR][1000 genomes]
rs59956872	1.00[EUR][1000 genomes]
rs60644934	1.00[AMR][1000 genomes]
rs6724469	0.85[AMR][1000 genomes]
rs6740161	1.00[EUR][1000 genomes]
rs719000	0.85[AMR][1000 genomes]
rs73940723	1.00[EUR][1000 genomes]
rs73940724	1.00[EUR][1000 genomes]
rs73940726	1.00[EUR][1000 genomes]
rs73940728	1.00[EUR][1000 genomes]
rs7586424	1.00[EUR][1000 genomes]
rs7595192	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7599191	1.00[EUR][1000 genomes]
rs763510	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv874179	chr2:56817927-56957466	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv874180	chr2:56822558-56957466	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv582058	chr2:56892585-57016392	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv582059	chr2:56892585-57175087	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv535727	chr2:56895497-57059359	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1007347	chr2:56904928-57100439	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56932200-56943000	Weak transcription	Psoas Muscle	Psoas
2	chr2:56933800-56940400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:56934600-56935200	Enhancers	H9 Cell Line	embryonic stem cell
4	chr2:56934600-56935200	Enhancers	HUES48 Cell Line	embryonic stem cell

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