Variant report

Variant	rs10186037
Chromosome Location	chr2:57036779-57036780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:57035108..57036803-chr2:57124744..57126282,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10181083	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10182461	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10193415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10195595	0.85[AMR][1000 genomes]
rs10198695	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10203056	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10208926	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13384215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13384616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13390034	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13393598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13395773	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13415120	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13419160	0.85[AMR][1000 genomes]
rs17048350	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048370	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17048375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60644934	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6724469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs719000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7595192	0.85[AMR][1000 genomes]
rs763510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv582059	chr2:56892585-57175087	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv535727	chr2:56895497-57059359	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1007347	chr2:56904928-57100439	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv582060	chr2:56941668-57137622	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1002180	chr2:57019964-57130245	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:57034400-57039000	Weak transcription	NHEK	skin
2	chr2:57034600-57039200	Weak transcription	Hela-S3	cervix
3	chr2:57035400-57039600	Weak transcription	A549	lung

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