Variant report

Variant	rs13395773
Chromosome Location	chr2:57028898-57028899
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10181083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10182461	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10183100	0.85[AMR][1000 genomes]
rs10186037	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10188327	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10193415	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10195595	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10198695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10203056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10208926	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12328751	0.85[AMR][1000 genomes]
rs13384215	0.85[AMR][1000 genomes]
rs13384616	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13385548	0.85[AMR][1000 genomes]
rs13390034	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13393598	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13398719	0.85[AMR][1000 genomes]
rs13407080	0.85[AMR][1000 genomes]
rs13415120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13419160	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17048350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048370	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048373	0.85[AMR][1000 genomes]
rs17048375	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048398	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17048400	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2067828	0.85[AMR][1000 genomes]
rs28673216	0.85[AMR][1000 genomes]
rs60644934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6724469	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs719000	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7595192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs763510	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv582059	chr2:56892585-57175087	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv535727	chr2:56895497-57059359	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1007347	chr2:56904928-57100439	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv582060	chr2:56941668-57137622	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1002180	chr2:57019964-57130245	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:57028200-57029400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:57028400-57029600	Enhancers	Fetal Heart	heart
3	chr2:57028600-57029400	Enhancers	Liver	Liver
4	chr2:57028600-57029400	Enhancers	NHEK	skin
5	chr2:57028800-57029400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:57028800-57029600	Enhancers	Muscle Satellite Cultured Cells	--

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