Variant report

Variant	rs13407080
Chromosome Location	chr2:56954301-56954302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10171224	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10178661	1.00[EUR][1000 genomes]
rs10181083	0.85[AMR][1000 genomes]
rs10181900	1.00[EUR][1000 genomes]
rs10183100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10188327	0.84[AFR][1000 genomes]
rs10195595	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10198695	0.85[AMR][1000 genomes]
rs10200031	1.00[EUR][1000 genomes]
rs10202443	1.00[EUR][1000 genomes]
rs10203056	0.85[AMR][1000 genomes]
rs10208606	1.00[EUR][1000 genomes]
rs10208926	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11897129	1.00[EUR][1000 genomes]
rs12328751	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13382467	1.00[EUR][1000 genomes]
rs13384170	1.00[EUR][1000 genomes]
rs13384989	1.00[EUR][1000 genomes]
rs13385548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13386206	1.00[EUR][1000 genomes]
rs13390034	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13392858	1.00[EUR][1000 genomes]
rs13395773	0.85[AMR][1000 genomes]
rs13398719	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13411174	1.00[EUR][1000 genomes]
rs13412157	1.00[EUR][1000 genomes]
rs13415120	0.85[AMR][1000 genomes]
rs13417902	1.00[EUR][1000 genomes]
rs13418673	1.00[EUR][1000 genomes]
rs13419160	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13431398	1.00[EUR][1000 genomes]
rs17048189	1.00[EUR][1000 genomes]
rs17048223	1.00[EUR][1000 genomes]
rs17048350	0.85[AMR][1000 genomes]
rs17048370	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2067828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2081427	1.00[EUR][1000 genomes]
rs2216493	1.00[EUR][1000 genomes]
rs28673216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2904312	1.00[EUR][1000 genomes]
rs55923854	1.00[EUR][1000 genomes]
rs59211909	1.00[EUR][1000 genomes]
rs59956872	1.00[EUR][1000 genomes]
rs60644934	0.85[AMR][1000 genomes]
rs6740161	1.00[EUR][1000 genomes]
rs73940723	1.00[EUR][1000 genomes]
rs73940724	1.00[EUR][1000 genomes]
rs73940726	1.00[EUR][1000 genomes]
rs73940728	1.00[EUR][1000 genomes]
rs7586424	1.00[EUR][1000 genomes]
rs7595192	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7599191	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv874179	chr2:56817927-56957466	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv874180	chr2:56822558-56957466	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv582058	chr2:56892585-57016392	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv582059	chr2:56892585-57175087	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv535727	chr2:56895497-57059359	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1007347	chr2:56904928-57100439	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv582060	chr2:56941668-57137622	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56954000-56955000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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