Variant report

Variant	rs10188327
Chromosome Location	chr2:56989775-56989776
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10181083	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10183100	0.84[AFR][1000 genomes]
rs10195595	0.85[AMR][1000 genomes]
rs10198695	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10203056	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10208926	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13390034	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13395773	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13407080	0.84[AFR][1000 genomes]
rs13415120	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13419160	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17048350	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17048370	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2067828	0.84[AFR][1000 genomes]
rs28673216	0.84[AFR][1000 genomes]
rs60644934	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7595192	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv582058	chr2:56892585-57016392	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv582059	chr2:56892585-57175087	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv535727	chr2:56895497-57059359	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1007347	chr2:56904928-57100439	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv582060	chr2:56941668-57137622	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56986000-56990600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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