Variant report

Variant	rs10174152
Chromosome Location	chr2:178815157-178815158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178814531..178817473-chr2:178843941..178845448,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10186697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10189134	0.92[ASW][hapmap];0.88[LWK][hapmap];0.87[MKK][hapmap]
rs10195518	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10202419	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs10221783	0.92[ASW][hapmap];0.92[LWK][hapmap]
rs13382373	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13384920	1.00[AMR][1000 genomes]
rs13385419	0.83[AMR][1000 genomes]
rs13387463	0.86[YRI][hapmap]
rs13395151	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs13398395	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs13398604	1.00[ASW][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs13399957	0.83[AMR][1000 genomes]
rs13403540	1.00[YRI][hapmap]
rs13406220	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13426284	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs13427600	0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13429906	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs1344920	1.00[MEX][hapmap]
rs60230155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7556748	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.93[YRI][hapmap]
rs7569124	1.00[AMR][1000 genomes]
rs7600368	0.92[ASW][hapmap];0.88[LWK][hapmap];0.88[MKK][hapmap]
rs9973525	0.93[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv3055	chr2:178800438-178819638	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2762296	chr2:178812726-178818029	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10174152	DAPK1	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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