Variant report
| Variant | rs13403540 |
|---|---|
| Chromosome Location | chr2:178818332-178818333 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:178817015..178819167-chr2:178824979..178826962,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10174152 | 1.00[YRI][hapmap] |
| rs10186697 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10195518 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10202419 | 0.93[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs13382373 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13384920 | 1.00[AMR][1000 genomes] |
| rs13385419 | 0.83[AMR][1000 genomes] |
| rs13387463 | 0.87[YRI][hapmap] |
| rs13395151 | 0.93[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs13398395 | 0.93[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs13398604 | 0.93[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs13399957 | 0.83[AMR][1000 genomes] |
| rs13406220 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs13426284 | 0.83[AMR][1000 genomes] |
| rs13427600 | 0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13429906 | 0.93[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs60230155 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7556748 | 0.93[YRI][hapmap] |
| rs7569124 | 1.00[AMR][1000 genomes] |
| rs9973525 | 0.93[YRI][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533377 | chr2:178718801-178963463 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007579 | chr2:178729330-178890946 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv875451 | chr2:178748294-178953409 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv998304 | chr2:178756380-178924378 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv536056 | chr2:178756380-178924378 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 6 | nsv3055 | chr2:178800438-178819638 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
