Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10174152	1.00[YRI][hapmap]
rs10186697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10202419	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13382373	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13384920	1.00[AMR][1000 genomes]
rs13385419	0.83[AMR][1000 genomes]
rs13387463	0.87[YRI][hapmap]
rs13395151	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13398395	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13398604	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13399957	0.83[AMR][1000 genomes]
rs13403540	1.00[YRI][hapmap]
rs13406220	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13426284	0.83[AMR][1000 genomes]
rs13427600	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13429906	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs60230155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7556748	1.00[YRI][hapmap]
rs7569124	1.00[AMR][1000 genomes]
rs9973525	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv215311	chr2:178822646-178831927	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178822600-178823200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:178823000-178828000	Weak transcription	Ovary	ovary

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