Variant report

Variant	rs10174337
Chromosome Location	chr2:178940488-178940489
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178940431..178942693-chr2:179060357..179062621,2	K562	blood:
2	chr2:178757808..178759787-chr2:178940377..178942583,2	K562	blood:
3	chr2:178939852..178942987-chr2:178976321..178978354,3	K562	blood:
4	chr2:178940297..178942724-chr2:178946031..178947901,2	K562	blood:
5	chr2:178932912..178934541-chr2:178939711..178942332,2	K562	blood:
6	chr2:178868883..178871066-chr2:178940272..178942031,2	K562	blood:
7	chr2:178937877..178941148-chr2:179277958..179279935,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10186953	0.80[AFR][1000 genomes]
rs10186977	1.00[AMR][1000 genomes]
rs10207459	0.80[AFR][1000 genomes]
rs10211057	0.80[AFR][1000 genomes]
rs10497477	0.80[AFR][1000 genomes]
rs10497478	0.80[AFR][1000 genomes]
rs12693151	0.80[AFR][1000 genomes]
rs13002398	0.80[AFR][1000 genomes]
rs13017462	0.80[AFR][1000 genomes]
rs13017473	0.80[AFR][1000 genomes]
rs13021204	0.80[AFR][1000 genomes]
rs13023939	0.80[AFR][1000 genomes]
rs13034432	0.80[AFR][1000 genomes]
rs13383696	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13388890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13389574	0.80[AFR][1000 genomes]
rs13391481	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397839	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402629	0.80[AFR][1000 genomes]
rs13402636	0.80[AFR][1000 genomes]
rs13405581	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13406131	0.80[AFR][1000 genomes]
rs13408518	0.80[AFR][1000 genomes]
rs13408911	0.80[AFR][1000 genomes]
rs13415041	0.80[AFR][1000 genomes]
rs13419927	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13422706	0.80[AFR][1000 genomes]
rs17330012	0.80[AFR][1000 genomes]
rs17330172	0.80[AFR][1000 genomes]
rs17402102	0.80[AFR][1000 genomes]
rs28621588	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34206020	0.80[AFR][1000 genomes]
rs34363929	0.80[AFR][1000 genomes]
rs34473720	0.80[AFR][1000 genomes]
rs34767203	0.80[AFR][1000 genomes]
rs34948302	0.80[AFR][1000 genomes]
rs35233809	0.80[AFR][1000 genomes]
rs35924394	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178940000-178941600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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