Variant report

Variant	rs13391481
Chromosome Location	chr2:178871352-178871353
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178863558..178865293-chr2:178869308..178871860,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10174337	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10186953	0.85[AFR][1000 genomes]
rs10186977	1.00[AMR][1000 genomes]
rs10207459	0.85[AFR][1000 genomes]
rs10211057	0.85[AFR][1000 genomes]
rs10497477	0.85[AFR][1000 genomes]
rs10497478	0.85[AFR][1000 genomes]
rs12693151	0.85[AFR][1000 genomes]
rs13002398	0.85[AFR][1000 genomes]
rs13017462	0.85[AFR][1000 genomes]
rs13017473	0.85[AFR][1000 genomes]
rs13019623	0.81[AFR][1000 genomes]
rs13021204	0.85[AFR][1000 genomes]
rs13023939	0.85[AFR][1000 genomes]
rs13034432	0.85[AFR][1000 genomes]
rs13383696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13388890	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13389574	0.85[AFR][1000 genomes]
rs13397357	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397839	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402629	0.85[AFR][1000 genomes]
rs13402636	0.85[AFR][1000 genomes]
rs13405581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13406131	0.85[AFR][1000 genomes]
rs13408518	0.85[AFR][1000 genomes]
rs13408911	0.85[AFR][1000 genomes]
rs13415041	0.85[AFR][1000 genomes]
rs13419927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13422706	0.85[AFR][1000 genomes]
rs17330012	0.85[AFR][1000 genomes]
rs17330172	0.85[AFR][1000 genomes]
rs17401951	0.81[AFR][1000 genomes]
rs17402102	0.85[AFR][1000 genomes]
rs28621588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34206020	0.85[AFR][1000 genomes]
rs34363929	0.85[AFR][1000 genomes]
rs34473720	0.85[AFR][1000 genomes]
rs34767203	0.85[AFR][1000 genomes]
rs34948302	0.85[AFR][1000 genomes]
rs35233809	0.85[AFR][1000 genomes]
rs35924394	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178863600-178873400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:178870800-178871800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr2:178871000-178872200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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