Variant report

Variant	rs13388890
Chromosome Location	chr2:178969294-178969295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10171486	1.00[YRI][hapmap]
rs10174337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10186953	0.80[AFR][1000 genomes]
rs10186977	1.00[AMR][1000 genomes]
rs10202989	1.00[YRI][hapmap]
rs10207459	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10211057	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10497477	1.00[LWK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10497478	0.80[AFR][1000 genomes]
rs10497481	1.00[YRI][hapmap]
rs10497483	1.00[YRI][hapmap]
rs10930819	1.00[YRI][hapmap]
rs11695211	0.87[YRI][hapmap]
rs12693147	1.00[YRI][hapmap]
rs12693151	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13002398	0.80[AFR][1000 genomes]
rs13017462	0.80[AFR][1000 genomes]
rs13017473	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13021204	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13023939	0.80[AFR][1000 genomes]
rs13034432	0.80[AFR][1000 genomes]
rs13383696	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13386639	1.00[YRI][hapmap]
rs13389574	0.87[YRI][hapmap];0.80[AFR][1000 genomes]
rs13390014	1.00[YRI][hapmap]
rs13391481	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397357	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397839	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402629	1.00[LWK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13402636	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13405581	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13405585	1.00[YRI][hapmap]
rs13406131	0.80[AFR][1000 genomes]
rs13408518	0.80[AFR][1000 genomes]
rs13408911	0.80[AFR][1000 genomes]
rs13410486	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs13415041	0.80[AFR][1000 genomes]
rs13419927	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13421772	1.00[YRI][hapmap]
rs13422367	1.00[MEX][hapmap];0.87[YRI][hapmap]
rs13422706	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13427929	1.00[YRI][hapmap]
rs17329956	1.00[YRI][hapmap]
rs17329998	1.00[YRI][hapmap]
rs17330012	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs17330172	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs17401916	1.00[YRI][hapmap]
rs17401951	1.00[YRI][hapmap]
rs17402102	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs2043548	1.00[YRI][hapmap]
rs28621588	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34206020	0.80[AFR][1000 genomes]
rs34363929	0.80[AFR][1000 genomes]
rs34473720	0.80[AFR][1000 genomes]
rs34767203	0.80[AFR][1000 genomes]
rs34948302	0.80[AFR][1000 genomes]
rs35233809	0.80[AFR][1000 genomes]
rs35924394	0.80[AFR][1000 genomes]
rs3861373	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv583739	chr2:178942302-178993562	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv518790	chr2:178963445-179000291	Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178966600-178970400	Weak transcription	K562	blood

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