Variant report

Variant	rs13427929
Chromosome Location	chr2:178911137-178911138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10171486	1.00[YRI][hapmap]
rs10174337	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10186953	0.80[AFR][1000 genomes]
rs10186977	1.00[AMR][1000 genomes]
rs10200643	1.00[YRI][hapmap]
rs10202989	1.00[YRI][hapmap]
rs10207459	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10211057	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10497477	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10497478	0.80[AFR][1000 genomes]
rs10497481	1.00[YRI][hapmap]
rs10497483	1.00[YRI][hapmap]
rs10930819	1.00[YRI][hapmap]
rs11695211	0.85[YRI][hapmap]
rs12693147	1.00[YRI][hapmap]
rs12693151	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13002398	0.80[AFR][1000 genomes]
rs13017462	0.80[AFR][1000 genomes]
rs13017473	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13021204	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13023939	0.80[AFR][1000 genomes]
rs13034432	0.80[AFR][1000 genomes]
rs13383696	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13386639	1.00[YRI][hapmap]
rs13388890	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13389574	0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs13390014	1.00[YRI][hapmap]
rs13391481	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13392577	1.00[YRI][hapmap]
rs13397357	0.87[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397839	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13402629	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13402636	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13405581	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13405585	1.00[YRI][hapmap]
rs13406131	0.80[AFR][1000 genomes]
rs13408518	0.80[AFR][1000 genomes]
rs13408911	0.80[AFR][1000 genomes]
rs13410486	1.00[YRI][hapmap]
rs13415041	0.80[AFR][1000 genomes]
rs13419927	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13421772	1.00[YRI][hapmap]
rs13422367	0.85[YRI][hapmap]
rs13422706	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13426862	1.00[YRI][hapmap]
rs13429445	1.00[YRI][hapmap]
rs17329956	1.00[YRI][hapmap]
rs17329998	1.00[YRI][hapmap]
rs17330012	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs17330172	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs17401293	1.00[YRI][hapmap]
rs17401916	1.00[YRI][hapmap]
rs17401951	1.00[YRI][hapmap]
rs17402102	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs2043548	1.00[YRI][hapmap]
rs28621588	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34206020	0.80[AFR][1000 genomes]
rs34363929	0.80[AFR][1000 genomes]
rs34473720	0.80[AFR][1000 genomes]
rs34767203	0.80[AFR][1000 genomes]
rs34948302	0.80[AFR][1000 genomes]
rs35233809	0.80[AFR][1000 genomes]
rs35924394	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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