Variant report

Variant	rs13422367
Chromosome Location	chr2:178949925-178949926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10171486	1.00[YRI][hapmap]
rs10195225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10202989	0.85[YRI][hapmap]
rs10206885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10207459	0.82[YRI][hapmap]
rs10211057	1.00[YRI][hapmap]
rs10497477	0.87[YRI][hapmap]
rs10497478	0.88[YRI][hapmap]
rs10497481	0.87[YRI][hapmap]
rs10497483	0.87[YRI][hapmap]
rs10930819	0.87[YRI][hapmap]
rs12693147	1.00[YRI][hapmap]
rs12693151	0.85[YRI][hapmap]
rs13017473	0.85[YRI][hapmap]
rs13021204	0.87[YRI][hapmap]
rs13386639	0.87[YRI][hapmap]
rs13388890	1.00[MEX][hapmap];0.87[YRI][hapmap]
rs13390014	0.87[YRI][hapmap]
rs13392577	0.87[YRI][hapmap]
rs13397185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397357	0.87[YRI][hapmap]
rs13402629	0.87[YRI][hapmap]
rs13402636	0.87[YRI][hapmap]
rs13405585	0.87[YRI][hapmap]
rs13410412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13410486	0.87[YRI][hapmap]
rs13419927	1.00[MEX][hapmap];0.87[YRI][hapmap]
rs13421772	0.87[YRI][hapmap]
rs13422706	0.85[YRI][hapmap]
rs13427929	0.85[YRI][hapmap]
rs17329956	0.87[YRI][hapmap]
rs17329998	0.87[YRI][hapmap]
rs17330012	0.87[YRI][hapmap]
rs17330172	0.87[YRI][hapmap]
rs17401916	1.00[YRI][hapmap]
rs17401951	1.00[YRI][hapmap]
rs17402102	0.87[YRI][hapmap]
rs2043548	0.87[YRI][hapmap]
rs3861373	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv583739	chr2:178942302-178993562	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13422367	TFF2	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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