Variant report

Variant	rs10175460
Chromosome Location	chr2:231340161-231340162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10209589	1.00[ASN][1000 genomes]
rs11689231	1.00[CHB][hapmap]
rs12694867	1.00[CHD][hapmap]
rs13410424	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413034	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17273810	1.00[CHB][hapmap]
rs17330341	1.00[CHB][hapmap]
rs1972707	1.00[CHB][hapmap]
rs36090545	1.00[ASN][1000 genomes]
rs6710287	1.00[CHD][hapmap]
rs6710297	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv584672	chr2:231289976-231348888	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231288800-231356000	Weak transcription	Stomach Mucosa	stomach
2	chr2:231301800-231345000	Weak transcription	A549	lung
3	chr2:231322200-231340200	Strong transcription	Liver	Liver
4	chr2:231329600-231343800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:231332000-231345200	Weak transcription	Brain Substantia Nigra	brain
6	chr2:231332400-231344400	Weak transcription	Gastric	stomach
7	chr2:231334200-231356000	Weak transcription	Fetal Intestine Small	intestine
8	chr2:231334800-231358400	Weak transcription	Fetal Stomach	stomach
9	chr2:231335000-231344400	Weak transcription	Aorta	Aorta
10	chr2:231335000-231359000	Weak transcription	NHLF	lung
11	chr2:231335600-231340200	Weak transcription	Fetal Intestine Large	intestine
12	chr2:231335600-231344600	Weak transcription	Pancreas	Pancrea
13	chr2:231336000-231343800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr2:231336000-231344400	Weak transcription	Esophagus	oesophagus
15	chr2:231336000-231356000	Weak transcription	NHDF-Ad	bronchial
16	chr2:231336200-231342200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr2:231336200-231344400	Weak transcription	HSMMtube	muscle
18	chr2:231336400-231343800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr2:231336400-231345200	Weak transcription	Small Intestine	intestine
20	chr2:231336400-231363400	Weak transcription	Fetal Lung	lung
21	chr2:231336600-231342200	Weak transcription	Ovary	ovary
22	chr2:231336600-231344200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr2:231336600-231345000	Weak transcription	Spleen	Spleen
24	chr2:231336600-231356200	Weak transcription	Placenta	Placenta
25	chr2:231336600-231363400	Weak transcription	Right Ventricle	heart
26	chr2:231336800-231343400	Weak transcription	HSMM	muscle
27	chr2:231336800-231343800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr2:231336800-231344200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr2:231336800-231376000	Weak transcription	Colonic Mucosa	Colon
30	chr2:231337000-231342200	Weak transcription	HUVEC	blood vessel
31	chr2:231337800-231351400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:231337800-231359200	Weak transcription	HMEC	breast
33	chr2:231338000-231344200	Weak transcription	Osteobl	bone
34	chr2:231338000-231344400	Weak transcription	NHEK	skin
35	chr2:231338400-231340800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:231338400-231341600	Weak transcription	Left Ventricle	heart
37	chr2:231338400-231343800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr2:231338400-231344200	Weak transcription	Fetal Muscle Leg	muscle
39	chr2:231338400-231344200	Weak transcription	Thymus	Thymus
40	chr2:231338400-231344400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr2:231338400-231355200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:231338400-231376200	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr2:231338600-231340800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr2:231338600-231344200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr2:231338600-231344200	Weak transcription	Dnd41	blood
46	chr2:231338600-231344400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr2:231338800-231341600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr2:231338800-231343400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr2:231338800-231344200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr2:231338800-231344600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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