Variant report

Variant	rs36090545
Chromosome Location	chr2:231387504-231387505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10175460	1.00[ASN][1000 genomes]
rs10209589	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13410424	1.00[ASN][1000 genomes]
rs13413034	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875948	chr2:231380697-231420401	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv584673	chr2:231385231-231433237	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231370800-231389600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr2:231371000-231409800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:231375200-231390200	Weak transcription	Ovary	ovary
4	chr2:231376600-231390200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:231376600-231390400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:231378000-231390800	Weak transcription	Spleen	Spleen
7	chr2:231385200-231390400	Weak transcription	Small Intestine	intestine
8	chr2:231385400-231391000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:231385600-231390200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:231386600-231389400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr2:231386600-231390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:231386600-231390200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr2:231386600-231390200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:231386600-231390200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:231386600-231390200	Weak transcription	Left Ventricle	heart
16	chr2:231386800-231389600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:231386800-231390000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:231386800-231390200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr2:231386800-231390400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:231386800-231390400	Weak transcription	Primary T cells from cord blood	blood
21	chr2:231386800-231390400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr2:231386800-231391000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr2:231387000-231389200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr2:231387000-231389600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr2:231387000-231390200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr2:231387000-231390400	Weak transcription	Liver	Liver
27	chr2:231387200-231390000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr2:231387200-231390000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr2:231387400-231390200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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