Variant report

Variant	rs10177270
Chromosome Location	chr2:86893943-86893944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10165856	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10172656	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10181796	0.82[AFR][1000 genomes]
rs10193391	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13383459	0.84[AFR][1000 genomes]
rs13389805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13390638	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13397238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13406823	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59335898	1.00[AMR][1000 genomes]
rs6734746	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9967788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1011590	chr2:86824181-86906114	Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86888800-86898200	Weak transcription	Ovary	ovary
2	chr2:86891800-86898600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:86892000-86901200	Weak transcription	Primary hematopoietic stem cells	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links