Variant report

Variant	rs59335898
Chromosome Location	chr2:86876880-86876881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10165856	1.00[AMR][1000 genomes]
rs10172656	1.00[AMR][1000 genomes]
rs10177270	1.00[AMR][1000 genomes]
rs10193391	1.00[AMR][1000 genomes]
rs10210671	0.87[AFR][1000 genomes]
rs13389805	1.00[AMR][1000 genomes]
rs13390638	1.00[AMR][1000 genomes]
rs13397238	1.00[AMR][1000 genomes]
rs13406823	1.00[AMR][1000 genomes]
rs13426260	0.83[AFR][1000 genomes]
rs6734746	1.00[AMR][1000 genomes]
rs9967788	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1011590	chr2:86824181-86906114	Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86875000-86877000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:86875800-86877200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr2:86875800-86877200	Enhancers	Stomach Mucosa	stomach
4	chr2:86876600-86877000	Enhancers	Liver	Liver
5	chr2:86876800-86877200	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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