Variant report

Variant	rs6734746
Chromosome Location	chr2:86924979-86924980
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10165856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10169475	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs10172656	1.00[AMR][1000 genomes]
rs10177270	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10181796	1.00[AFR][1000 genomes]
rs10193391	1.00[AMR][1000 genomes]
rs13389805	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13390638	1.00[AMR][1000 genomes]
rs13397238	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13406312	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs13406823	1.00[AMR][1000 genomes]
rs13411320	1.00[MEX][hapmap]
rs59335898	1.00[AMR][1000 genomes]
rs6730650	1.00[MEX][hapmap]
rs7563485	1.00[MEX][hapmap]
rs9967788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86923200-86932800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:86924400-86925000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:86924400-86925000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr2:86924400-86925400	Enhancers	Stomach Mucosa	stomach
5	chr2:86924600-86925000	Enhancers	Primary B cells from peripheral blood	blood
6	chr2:86924600-86925000	Enhancers	Primary T cells from cord blood	blood
7	chr2:86924600-86925000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:86924600-86925000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:86924600-86925000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:86924600-86925000	Enhancers	HMEC	breast
11	chr2:86924600-86925200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:86924600-86925200	Enhancers	Dnd41	blood
13	chr2:86924600-86925200	Enhancers	NHEK	skin
14	chr2:86924600-86925400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr2:86924600-86925600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:86924800-86925200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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