Variant report

Variant	rs10177872
Chromosome Location	chr2:10178651-10178652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:10178347-10179211	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:10177980..10179820-chr2:10584164..10586131,2	K562	blood:
2	chr2:10108326..10110432-chr2:10178116..10179884,2	K562	blood:
3	chr2:10160149..10163716-chr2:10178459..10180847,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLF11-1	chr2:10178505-10178720	XLOC_001341

No data

Variant related genes	Relation type
KLF11	TF binding region
ENSG00000260476	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10929632	1.00[ASN][1000 genomes]
rs11886661	1.00[ASN][1000 genomes]
rs13400128	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935840	1.00[ASN][1000 genomes]
rs4302193	1.00[ASN][1000 genomes]
rs4321336	1.00[ASN][1000 genomes]
rs4485541	1.00[ASN][1000 genomes]
rs4569449	1.00[ASN][1000 genomes]
rs4669527	1.00[ASN][1000 genomes]
rs6432058	1.00[ASN][1000 genomes]
rs6432060	1.00[ASN][1000 genomes]
rs72786623	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786624	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587317	1.00[ASN][1000 genomes]
rs7587529	1.00[ASN][1000 genomes]
rs7602408	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011125	chr2:9996740-10293803	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv1011689	chr2:10023891-10293803	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv997334	chr2:10080327-10189279	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv828297	chr2:10109299-10236332	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1007965	chr2:10154960-10276125	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv1014790	chr2:10156968-10274855	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	nsv999019	chr2:10157762-10273232	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
8	nsv873633	chr2:10175442-10266563	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
9	nsv828308	chr2:10175525-10200328	Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10169800-10179200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:10170600-10182000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:10170800-10179800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:10170800-10182000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:10170800-10182000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:10170800-10182400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:10171000-10180000	Weak transcription	Fetal Brain Male	brain
8	chr2:10171400-10182000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:10171600-10182000	Weak transcription	Fetal Intestine Large	intestine
10	chr2:10173800-10182400	Weak transcription	Gastric	stomach
11	chr2:10175000-10179200	Enhancers	Left Ventricle	heart
12	chr2:10175400-10179000	Enhancers	Brain Cingulate Gyrus	brain
13	chr2:10175400-10179000	Enhancers	Lung	lung
14	chr2:10175800-10178800	Enhancers	Hela-S3	cervix
15	chr2:10175800-10179400	Enhancers	NHDF-Ad	bronchial
16	chr2:10175800-10180400	Enhancers	Brain Anterior Caudate	brain
17	chr2:10175800-10180600	Enhancers	Osteobl	bone
18	chr2:10175800-10181200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:10176000-10178800	Weak transcription	K562	blood
20	chr2:10176000-10179000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:10176000-10179000	Strong transcription	Fetal Intestine Small	intestine
22	chr2:10176000-10179000	Enhancers	Right Ventricle	heart
23	chr2:10176000-10179000	Enhancers	HSMM	muscle
24	chr2:10176000-10180400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:10176000-10181200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr2:10176200-10179000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:10176400-10182600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr2:10176600-10181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr2:10176600-10182200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr2:10176600-10182400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr2:10176600-10182800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr2:10176800-10182000	Enhancers	Colon Smooth Muscle	Colon
33	chr2:10176800-10182200	Enhancers	Rectal Smooth Muscle	rectum
34	chr2:10176800-10182400	Enhancers	Adipose Nuclei	Adipose
35	chr2:10177000-10180200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr2:10177000-10182000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr2:10177000-10182200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr2:10177000-10182200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr2:10177000-10182200	Weak transcription	Fetal Brain Female	brain
40	chr2:10177200-10179000	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr2:10177200-10179600	Enhancers	Brain Hippocampus Middle	brain
42	chr2:10177200-10179800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr2:10177200-10181000	Weak transcription	Colonic Mucosa	Colon
44	chr2:10177200-10181200	Weak transcription	Stomach Mucosa	stomach
45	chr2:10177200-10182000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr2:10177200-10182200	Weak transcription	Fetal Lung	lung
47	chr2:10177200-10182400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr2:10177400-10180000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr2:10177600-10180800	Weak transcription	Fetal Heart	heart
50	chr2:10177600-10181400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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