Variant report

Variant	rs11886661
Chromosome Location	chr2:10239944-10239945
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10177872	1.00[ASN][1000 genomes]
rs10929632	1.00[ASN][1000 genomes]
rs13400128	1.00[ASN][1000 genomes]
rs3935840	1.00[ASN][1000 genomes]
rs4302193	1.00[ASN][1000 genomes]
rs4321336	1.00[ASN][1000 genomes]
rs4485541	1.00[ASN][1000 genomes]
rs4569449	1.00[ASN][1000 genomes]
rs4669527	1.00[ASN][1000 genomes]
rs6432058	1.00[ASN][1000 genomes]
rs6432060	1.00[ASN][1000 genomes]
rs72786623	1.00[ASN][1000 genomes]
rs72786624	1.00[ASN][1000 genomes]
rs7587317	1.00[ASN][1000 genomes]
rs7587529	1.00[ASN][1000 genomes]
rs7602408	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011125	chr2:9996740-10293803	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv1011689	chr2:10023891-10293803	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv1007965	chr2:10154960-10276125	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1014790	chr2:10156968-10274855	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv999019	chr2:10157762-10273232	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv873633	chr2:10175442-10266563	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
7	nsv1010706	chr2:10189219-10266995	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
8	nsv960954	chr2:10239771-10244547	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10232000-10240200	Weak transcription	Right Atrium	heart
2	chr2:10232000-10242600	Weak transcription	Pancreas	Pancrea
3	chr2:10237200-10245400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:10237600-10241400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:10237600-10241400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:10238000-10241400	Weak transcription	GM12878-XiMat	blood
7	chr2:10238000-10241600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:10238000-10241600	Weak transcription	Left Ventricle	heart
9	chr2:10238000-10243000	Weak transcription	K562	blood
10	chr2:10238000-10243200	Weak transcription	Fetal Intestine Small	intestine
11	chr2:10238000-10243400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:10238000-10243400	Weak transcription	Fetal Muscle Leg	muscle
13	chr2:10238000-10244600	Weak transcription	A549	lung
14	chr2:10238200-10243400	Weak transcription	Fetal Intestine Large	intestine
15	chr2:10239800-10242000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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