Variant report

Variant	rs10177961
Chromosome Location	chr2:178593771-178593772
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:178349562..178352238-chr2:178592339..178594428,2	MCF-7	breast:
2	chr2:178593465..178594969-chr2:178617292..178619155,2	K562	blood:
3	chr2:178593693..178595260-chr2:178600542..178602225,2	K562	blood:
4	chr2:178593275..178595968-chr2:178621315..178623404,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10165826	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10168641	0.83[YRI][hapmap];0.82[AMR][1000 genomes]
rs10172247	0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10172800	0.83[YRI][hapmap];0.82[AMR][1000 genomes]
rs10176298	0.86[YRI][hapmap]
rs10178433	0.81[YRI][hapmap]
rs10178985	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10192225	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs10194370	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs10202985	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10210259	0.94[AMR][1000 genomes]
rs13422021	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs13427906	0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs13429220	0.82[YRI][hapmap];0.94[AMR][1000 genomes]
rs13431084	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1438035	0.88[AMR][1000 genomes]
rs1438045	0.96[YRI][hapmap];0.84[AMR][1000 genomes]
rs1438046	0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16865593	0.93[YRI][hapmap]
rs16865604	0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs16865698	0.80[YRI][hapmap];0.82[AMR][1000 genomes]
rs16865700	0.82[AMR][1000 genomes]
rs16865709	0.93[YRI][hapmap]
rs1866214	0.93[YRI][hapmap]
rs2164858	0.83[YRI][hapmap];0.82[AMR][1000 genomes]
rs57807004	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs60501109	0.82[AMR][1000 genomes]
rs6708025	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6727390	0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6752409	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6760512	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs714528	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979531	0.82[AMR][1000 genomes]
rs7569984	0.83[YRI][hapmap];0.82[AMR][1000 genomes]
rs7583817	0.83[YRI][hapmap];0.82[AMR][1000 genomes]
rs7606084	0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178587800-178594000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:178589400-178594200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:178589400-178595600	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:178590600-178593800	Enhancers	Fetal Stomach	stomach
5	chr2:178592200-178595600	Enhancers	Fetal Kidney	kidney
6	chr2:178592400-178593800	Enhancers	Fetal Lung	lung
7	chr2:178592600-178594400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:178592800-178594000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:178593000-178596800	Weak transcription	Ovary	ovary
10	chr2:178593200-178594000	Flanking Active TSS	K562	blood
11	chr2:178593400-178593800	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:178593400-178594200	Enhancers	Brain Germinal Matrix	brain
13	chr2:178593600-178593800	Enhancers	Rectal Mucosa Donor 29	rectum

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