Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:178568725..178571101-chr2:178581270..178584257,2	K562	blood:
2	chr2:178577863..178580571-chr2:178582573..178585584,3	K562	blood:
3	chr2:178582201..178583122-chr2:178623256..178624160,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10165826	0.94[AMR][1000 genomes]
rs10168641	0.87[AMR][1000 genomes]
rs10172247	0.87[AMR][1000 genomes]
rs10172800	0.87[AMR][1000 genomes]
rs10177961	0.94[AMR][1000 genomes]
rs10178433	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10178985	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10192225	0.81[AMR][1000 genomes]
rs10194370	0.81[AMR][1000 genomes]
rs10202985	0.94[AMR][1000 genomes]
rs13412319	0.93[YRI][hapmap]
rs13422021	0.81[AMR][1000 genomes]
rs13427906	0.87[AMR][1000 genomes]
rs13429220	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13431084	0.94[AMR][1000 genomes]
rs1438035	0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1438046	0.87[AMR][1000 genomes]
rs16865593	0.81[AMR][1000 genomes]
rs16865604	0.87[AMR][1000 genomes]
rs16865698	0.87[AMR][1000 genomes]
rs16865700	0.87[AMR][1000 genomes]
rs16865709	0.81[AMR][1000 genomes]
rs1866214	0.81[AMR][1000 genomes]
rs2164858	0.87[AMR][1000 genomes]
rs57807004	0.87[AMR][1000 genomes]
rs60501109	0.87[AMR][1000 genomes]
rs6708025	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6727390	0.87[AMR][1000 genomes]
rs6737254	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6749088	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6752409	0.94[AMR][1000 genomes]
rs6760512	0.81[AMR][1000 genomes]
rs714528	0.94[AMR][1000 genomes]
rs73979531	0.87[AMR][1000 genomes]
rs7569984	0.87[AMR][1000 genomes]
rs7583817	0.87[AMR][1000 genomes]
rs7606084	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv431812	chr2:178525371-178584470	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1005854	chr2:178546907-178586608	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178581000-178587800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:178583000-178583200	Enhancers	Colon Smooth Muscle	Colon

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